[Debichem-devel] Bug#531419: Bug#531419: gromacs: FTBFS: error: couldn't find library libmd_mpi_d_openmpi.so.5

[Manuel Prinz]

Am Montag, den 01.06.2009, 19:15 -0700 schrieb Nicholas Breen:
> I confess that the peculiar interactions of compilers, fakeroot, and (e)glibc
> put me well out of my depth.
> 

ACK. But from what I see and experienced, I get the feeling that it's
related to eglibc. Anyway, here is my backtrace (amd64):

$ fakeroot gdb mpicc.openmpi 
GNU gdb 6.8-debian
Copyright (C) 2008 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.  Type "show copying"
and "show warranty" for details.
This GDB was configured as "x86_64-linux-gnu"...
(gdb) run test.c
Starting program: /usr/bin/mpicc.openmpi test.c
[Thread debugging using libthread_db enabled]
[New Thread 0x7f12cb12a6f0 (LWP 15930)]

Program received signal SIGSEGV, Segmentation fault.
[Switching to Thread 0x7f12cb12a6f0 (LWP 15930)]
__libc_calloc (n=1, elem_size=32) at malloc.c:3932
3932	malloc.c: No such file or directory.
	in malloc.c
(gdb) bt
#0  __libc_calloc (n=1, elem_size=32) at malloc.c:3932
#1  0x00007f12ca8af380 in _dlerror_run (operate=0x7f12ca8af0c0 <dlsym_doit>, args=0x7fffd314af60) at dlerror.c:142
#2  0x00007f12ca8af07a in __dlsym (handle=<value optimized out>, name=<value optimized out>) at dlsym.c:71
#3  0x00007f12cad2b016 in load_library_symbols () from /usr/lib/libfakeroot/libfakeroot-sysv.so
#4  0x00007f12cad2bc11 in tmp___xstat () from /usr/lib/libfakeroot/libfakeroot-sysv.so
#5  0x00007f12cad2af8d in __xstat () from /usr/lib/libfakeroot/libfakeroot-sysv.so
#6  0x00007f12caaea6dd in ?? () from /usr/lib/libopen-pal.so.0
#7  0x00007f12c9d148e1 in ptmalloc_init () at arena.c:571
#8  0x00007f12c9d18997 in malloc_hook_ini (sz=1, caller=0x20) at hooks.c:37
#9  0x00007f12caac2a95 in opal_class_initialize () from /usr/lib/libopen-pal.so.0
#10 0x00007f12caae0de9 in opal_output_init () from /usr/lib/libopen-pal.so.0
#11 0x00007f12caac52b3 in opal_init_util () from /usr/lib/libopen-pal.so.0
#12 0x0000000000402122 in main (argc=1, argv=0x20) at ../../../../../opal/tools/wrappers/opal_wrapper.c:480
(gdb) 

Diggin' deeper...

Best regards
Manuel
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