[Debichem-devel] Bug#549268: Fails to parse arguments to command-line options

[Vincent Fourmond]

Package: pymol
Version: 1.2r1-1
Severity: normal


  Hello,

  When starting pymol with a geometry specification, such as the
following, pymol -W 1000, it fails miserably with the following error:

~ pymol -W 1000 sdf
Traceback (most recent call last):
  File "/usr/lib/python2.5/runpy.py", line 95, in run_module
    filename, loader, alter_sys)
  File "/usr/lib/python2.5/runpy.py", line 52, in _run_module_code
    mod_name, mod_fname, mod_loader)
  File "/usr/lib/python2.5/runpy.py", line 32, in _run_code
    exec code in run_globals
  File "/usr/lib/pymodules/python2.5/pymol/__init__.py", line 489, in <module>
    invocation.parse_args(pymol_argv)            
  File "/usr/lib/pymodules/python2.5/pymol/invocation.py", line 223, in parse_args
    options.internal_feedback = int(av.pop())
IndexError: pop from empty list

  That sure did not happen with earlier versions ;-)...

  Cheers,

	Vincent


-- System Information:
Debian Release: squeeze/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (500, 'testing'), (500, 'stable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 2.6.30-2-amd64 (SMP w/2 CPU cores)
Locale: LANG=en_GB, LC_CTYPE=en_GB (charmap=ISO-8859-1)
Shell: /bin/sh linked to /bin/dash

Versions of packages pymol depends on:
ii  freeglut3              2.4.0-8           OpenGL Utility Toolkit
ii  libc6                  2.9-27            GNU C Library: Shared libraries
ii  libfreetype6           2.3.9-5           FreeType 2 font engine, shared lib
ii  libgcc1                1:4.4.1-4         GCC support library
ii  libgl1-mesa-glx [libgl 7.6-1             A free implementation of the OpenG
ii  libglu1-mesa [libglu1] 7.6-1             The OpenGL utility library (GLU)
ii  libpng12-0             1.2.39-1          PNG library - runtime
ii  libstdc++6             4.4.1-4           The GNU Standard C++ Library v3
ii  python                 2.5.4-2           An interactive high-level object-o
ii  python-pmw             1.3.2-3           Pmw -- Python MegaWidgets
ii  python-support         1.0.3             automated rebuilding support for P
ii  python-tk              2.5.2-1.1         Tkinter - Writing Tk applications 
ii  zlib1g                 1:1.2.3.3.dfsg-15 compression library - runtime

Versions of packages pymol recommends:
ii  apbs                          1.1.0-1    Adaptive Poisson Boltzmann Solver

pymol suggests no packages.

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