[Debichem-devel] Bug#607117: librheolef-dev and libsc-doc: error when trying to install together

Tue Dec 14 20:14:39 UTC 2010

Package: libsc-doc,librheolef-dev
Version: libsc-doc/2.3.1-6
Version: librheolef-dev/5.91-1
Severity: serious
User: treinen at debian.org
Usertags: edos-file-overwrite

Date: 2010-12-14
Architecture: amd64
Distribution: sid

Hi,

automatic installation tests of packages that share a file and at the
same time do not conflict by their package dependency relationships has
detected the following problem:

WARNING: The following packages cannot be authenticated!
  x11-common libice6 x11proto-core-dev libice-dev libxau6 libxdmcp6 libxcb1
  libx11-data libx11-6 libxau-dev libxdmcp-dev x11proto-input-dev
  x11proto-kb-dev xtrans-dev libpthread-stubs0 libpthread-stubs0-dev
  libxcb1-dev libx11-dev libmagic1 file libbsd0 libedit2 libgpg-error0
  libgcrypt11 libtasn1-3 libgnutls26 libkeyutils1 libkrb5support0 libk5crypto3
  libkrb5-3 libgssapi-krb5-2 libgssrpc4 libkadm5clnt-mit7 libkdb5-4
  libkadm5srv-mit7 libsasl2-2 libldap-2.4-2 libpcre3 libxml2 mime-support
  python2.6-minimal libexpat1 python2.6 python-minimal python python-support
  ucf binutils libgmp3c2 libmpfr4 cpp-4.4 cpp defoma libfreetype6
  ttf-dejavu-core fontconfig-config libfontconfig1 fontconfig libgomp1 gcc-4.4
  gcc libc-dev-bin linux-libc-dev libc6-dev libstdc++6-4.4-dev g++-4.4 g++
  gccxml libpixman-1-0 libpng12-0 libxcb-render0 libxcb-render-util0
  libxrender1 libcairo2 libjpeg62 libgd2-noxpm libglib2.0-0 libpango1.0-common
  libdatrie1 libthai-data libthai0 libxft2 libpango1.0-0 gnuplot-nox
  libwxbase2.8-0 libatk1.0-0 libdrm2 libxfixes3 libxdamage1 libxext6
  libxxf86vm1 libgl1-mesa-glx libglu1-mesa libgtk2.0-common
  libavahi-common-data libavahi-common3 libdbus-1-3 libavahi-client3 libcups2
  libjasper1 libtiff4 libxcomposite1 libxcursor1 libxi6 libxinerama1
  libxrandr2 shared-mime-info libgtk2.0-0 libsm6 libwxgtk2.8-0 gnuplot-x11
  gnuplot liblcms1 liblqr-1-0 libltdl7 libxt6 libmagickcore3 libmagickwand3
  imagemagick comerr-dev krb5-multidev libamd2.2.0 libavutil49
  libdirac-encoder0 libfaad2 libgsm1 libopenjpeg2 liborc-0.4-0
  libschroedinger-1.0-0 libspeex1 libogg0 libtheora0 libvorbis0a libvorbisenc2
  libavcodec52 libavutil-dev libavcodec-dev libavformat52 libavformat-dev
  libgfortran3 libblas3gf libblas-dev libicu44 libboost1.42-dev libboost-dev
  libboost-date-time1.42.0 libboost-serialization1.42.0
  libboost-serialization1.42-dev libboost-date-time1.42-dev
  libboost-date-time-dev libboost-system1.42.0 libboost-filesystem1.42.0
  libboost-system1.42-dev libboost-filesystem1.42-dev libboost-filesystem-dev
  libboost-test1.42.0 libboost-test1.42-dev libboost-graph1.42-dev
  libboost-graph-dev libboost-graph-parallel1.42-dev
  libboost-graph-parallel-dev libboost-regex1.42.0 libicu-dev
  libboost-regex1.42-dev libboost-iostreams1.42-dev libboost-iostreams-dev
  libboost-math1.42.0 libboost-math1.42-dev libboost-math-dev libibverbs1
  libnuma1 libtorque2 libopenmpi1.3 libboost-mpi1.42.0 openmpi-common
  libibverbs-dev libopenmpi-dev mpi-default-dev libboost-mpi1.42-dev
  libboost-mpi-dev libboost-mpi-python-dev libboost-program-options1.42.0
  libboost-program-options1.42-dev libboost-program-options-dev
  libboost-python1.42.0 libpython2.6 zlib1g-dev libssl-dev python2.6-dev
  python-dev libboost-python1.42-dev libboost-python-dev libboost-regex-dev
  libboost-serialization-dev libboost-signals1.42.0 libboost-signals1.42-dev
  libboost-signals-dev libboost-system-dev libboost-test-dev
  libboost-thread1.42.0 libboost-thread1.42-dev libboost-thread-dev
  libboost-wave1.42.0 libboost-wave1.42-dev libboost-wave-dev libboost-all-dev
  libbtf1.1.0 libcamd2.2.0 libccolamd2.7.1 libcolamd2.7.1 liblapack3gf
  libcholmod1.7.1 libcsparse2.2.3 libcxsparse2.2.3 libexpat1-dev
  libfreetype6-dev pkg-config libfontconfig1-dev mesa-common-dev
  libgl1-mesa-dev libgl2ps0 libgl2ps-dev libglu1-mesa-dev libjpeg62-dev
  libklu1.1.0 liblapack-dev libldl2.0.1 mysql-common libmysqlclient16
  libmysqlclient-dev libpng12-dev libpq5 libkrb5-dev libpq-dev libumfpack5.4.0
  librheolef5.91 libswscale0 libxss1 libvtk5.4 libsm-dev libxt-dev
  x11proto-xext-dev libxext-dev x11proto-scrnsaver-dev libxss-dev
  x11proto-render-dev libxrender-dev libxft-dev libtiffxx0c2 libtiff4-dev
  tcl8.5 tcl8.5-dev tk8.5 tk8.5-dev libswscale-dev libxml2-dev libvtk5-dev
  vtk-tcl rheolef libsuitesparse-dev librheolef-dev libsc-doc

Extracting templates from packages: 11%
Extracting templates from packages: 22%
Extracting templates from packages: 34%
Extracting templates from packages: 45%
Extracting templates from packages: 57%
Extracting templates from packages: 68%
Extracting templates from packages: 80%
Extracting templates from packages: 91%
Extracting templates from packages: 100%
Preconfiguring packages ...
Authentication warning overridden.
Can not write log, openpty() failed (/dev/pts not mounted?)
Selecting previously deselected package x11-common.
(Reading database ... 8685 files and directories currently installed.)
Unpacking x11-common (from .../x11-common_1%3a7.5+8_all.deb) ...
Selecting previously deselected package libice6.
Unpacking libice6 (from .../libice6_2%3a1.0.7-1_amd64.deb) ...
Selecting previously deselected package x11proto-core-dev.
Unpacking x11proto-core-dev (from .../x11proto-core-dev_7.0.19-1_all.deb) ...
Processing triggers for man-db ...
Can not write log, openpty() failed (/dev/pts not mounted?)
Setting up x11-common (1:7.5+8) ...
invoke-rc.d: policy-rc.d denied execution of start.
Can not write log, openpty() failed (/dev/pts not mounted?)
Selecting previously deselected package libice-dev.
(Reading database ... 8758 files and directories currently installed.)
Unpacking libice-dev (from .../libice-dev_2%3a1.0.7-1_amd64.deb) ...
Selecting previously deselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_amd64.deb) ...
Selecting previously deselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1_amd64.deb) ...
Selecting previously deselected package libxcb1.
Unpacking libxcb1 (from .../libxcb1_1.6-1_amd64.deb) ...
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Unpacking libx11-data (from .../libx11-data_2%3a1.3.3-4_all.deb) ...
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Unpacking libx11-6 (from .../libx11-6_2%3a1.3.3-4_amd64.deb) ...
Selecting previously deselected package libxau-dev.
Unpacking libxau-dev (from .../libxau-dev_1%3a1.0.6-1_amd64.deb) ...
Selecting previously deselected package libxdmcp-dev.
Unpacking libxdmcp-dev (from .../libxdmcp-dev_1%3a1.1.0-1_amd64.deb) ...
Selecting previously deselected package x11proto-input-dev.
Unpacking x11proto-input-dev (from .../x11proto-input-dev_2.0.1-1_all.deb) ...
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Unpacking x11proto-kb-dev (from .../x11proto-kb-dev_1.0.5-1_all.deb) ...
Selecting previously deselected package xtrans-dev.
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Selecting previously deselected package libmagic1.
Unpacking libmagic1 (from .../libmagic1_5.04-5_amd64.deb) ...
Selecting previously deselected package file.
Unpacking file (from .../archives/file_5.04-5_amd64.deb) ...
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Unpacking libbsd0 (from .../libbsd0_0.2.0-1_amd64.deb) ...
Selecting previously deselected package libedit2.
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Selecting previously deselected package libgpg-error0.
Unpacking libgpg-error0 (from .../libgpg-error0_1.6-1_amd64.deb) ...
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Selecting previously deselected package libgssapi-krb5-2.
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Selecting previously deselected package libgssrpc4.
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Selecting previously deselected package g++-4.4.
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Selecting previously deselected package g++.
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Selecting previously deselected package gccxml.
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Selecting previously deselected package libpixman-1-0.
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Unpacking libpng12-0 (from .../libpng12-0_1.2.44-1_amd64.deb) ...
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Selecting previously deselected package libxcb-render-util0.
Unpacking libxcb-render-util0 (from .../libxcb-render-util0_0.3.6-1_amd64.deb) ...
Selecting previously deselected package libxrender1.
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Selecting previously deselected package libcairo2.
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Selecting previously deselected package libglib2.0-0.
Unpacking libglib2.0-0 (from .../libglib2.0-0_2.24.2-1_amd64.deb) ...
Selecting previously deselected package libpango1.0-common.
Unpacking libpango1.0-common (from .../libpango1.0-common_1.28.3-1_all.deb) ...
Selecting previously deselected package libdatrie1.
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Selecting previously deselected package libthai-data.
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Selecting previously deselected package libthai0.
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Selecting previously deselected package libxft2.
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Selecting previously deselected package libpango1.0-0.
Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.3-1_amd64.deb) ...
Selecting previously deselected package gnuplot-nox.
Unpacking gnuplot-nox (from .../gnuplot-nox_4.4.0-1.1+b1_amd64.deb) ...
Selecting previously deselected package libwxbase2.8-0.
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Selecting previously deselected package libxdamage1.
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Selecting previously deselected package libxext6.
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Selecting previously deselected package libcups2.
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Selecting previously deselected package libwxgtk2.8-0.
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Selecting previously deselected package gnuplot-x11.
Unpacking gnuplot-x11 (from .../gnuplot-x11_4.4.0-1.1+b1_amd64.deb) ...
Adding 'diversion of /usr/bin/gnuplot to /usr/bin/gnuplot-nox by gnuplot-x11'
Adding 'diversion of /usr/share/man/man1/gnuplot.1.gz to /usr/share/man/man1/gnuplot-nox.1.gz by gnuplot-x11'
Selecting previously deselected package gnuplot.
Unpacking gnuplot (from .../gnuplot_4.4.0-1.1_all.deb) ...
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dpkg: error processing /var/cache/apt/archives/libsc-doc_2.3.1-6_all.deb (--unpack):
 trying to overwrite '/usr/share/man/man3/point.3.gz', which is also in package librheolef-dev 5.91-1
configured to not write apport reports
dpkg-deb: subprocess paste killed by signal (Broken pipe)
Processing triggers for man-db ...
Processing triggers for install-info ...
Errors were encountered while processing:
 /var/cache/apt/archives/libsc-doc_2.3.1-6_all.deb
E: Sub-process /usr/bin/dpkg returned an error code (1)
cow-shell unlink .ilist: No such file or directory

This is a serious bug as it makes installation fail, and violates
sections 7.6.1 and 10.1 of the policy. An optimal solution would
consist in only one of the packages installing that file, and renaming
or removing the file in the other package. Depending on the
circumstances you might also consider Replace relations or file
diversions. If the conflicting situation cannot be resolved then, as a
last resort, the two packages have to declare a mutual
Conflict. Please take into account that Replaces, Conflicts and
diversions should only be used when packages provide different
implementations for the same functionality.

Here is a list of files that are known to be shared by both packages
(according to the Contents file for sid/amd64, which may be
slightly out of sync):

  /usr/share/man/man3/point.3.gz

This bug is assigned to both packages. If you, the maintainers of
the two packages in question, have agreed on which of the packages will
resolve the problem please reassign the bug to that package. You may
also register in the BTS that the other package is affected by the bug.

-Ralf.

PS: for more information about the detection of file overwrite errors
of this kind see http://edos.debian.net/file-overwrites/.