[Debichem-devel] Bug#680825: gromacs: FTBFS: mv: cannot stat `/«PKGBUILDDIR»/debian/gromacs-mpich/usr/lib/*.so': No such file or directory

[Lucas Nussbaum]

Source: gromacs
Version: 4.5.5-2
Severity: serious
Tags: wheezy sid
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20120708 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part:
> make[4]: Entering directory `/«PKGBUILDDIR»/build/openmpi-dp'
> [100%] Installing mdrun
> -- Install configuration: "Release"
> -- Install component: "libraries"
> -- Install configuration: "Release"
> -- Install component: "mdrun"
> make[4]: Leaving directory `/«PKGBUILDDIR»/build/openmpi-dp'
> [100%] Built target install-mdrun
> make[3]: Leaving directory `/«PKGBUILDDIR»/build/openmpi-dp'
> make[2]: Leaving directory `/«PKGBUILDDIR»/build/openmpi-dp'
> make[1]: Leaving directory `/«PKGBUILDDIR»/build/openmpi-dp'
> dh_installman -pgromacs-openmpi debian/man/mdrun_mpi.openmpi.1
> dh_link -pgromacs-openmpi usr/share/man/man1/mdrun_mpi.openmpi.1.gz usr/share/man/man1/mdrun_mpi_d.openmpi.1.gz
> dh_lintian -pgromacs-openmpi
> dh_testdir
> dh_testroot
> dh_prep -pgromacs-data -pgromacs-dev
> # remove a duplicated file
> rm -f /«PKGBUILDDIR»/debian/gromacs/usr/share/gromacs/tutor/gmxdemo/demo_d
> dh_installdirs -pgromacs-data
> mv /«PKGBUILDDIR»/debian/gromacs/usr/share/gromacs/top \
> 	   /«PKGBUILDDIR»/debian/gromacs-data/usr/share/gromacs
> mv /«PKGBUILDDIR»/debian/gromacs/usr/share/gromacs/tutor \
> 	   /«PKGBUILDDIR»/debian/gromacs-data/usr/share/gromacs
> mv /«PKGBUILDDIR»/debian/gromacs/usr/share/gromacs/html \
> 	   /«PKGBUILDDIR»/debian/gromacs-data/usr/share/doc/gromacs
> mv /«PKGBUILDDIR»/debian/gromacs/usr/share/man \
> 	   /«PKGBUILDDIR»/debian/gromacs-data/usr/share/man
> # some of the default installation directories for documentation and
> # example shell scripts are not FHS-friendly; move them appropriately
> mv /«PKGBUILDDIR»/debian/gromacs/usr/bin/GMXRC* \
> 	   /«PKGBUILDDIR»/debian/gromacs/usr/bin/completion* \
> 	   /«PKGBUILDDIR»/debian/gromacs-data/usr/share/gromacs/shell-specific
> chmod 644 /«PKGBUILDDIR»/debian/gromacs-data/usr/share/gromacs/shell-specific/*
> dh_link -pgromacs-data usr/share/doc/gromacs/html usr/share/doc/gromacs-data/html
> dh_link -pgromacs-data usr/share/doc/gromacs/html usr/share/doc/gromacs-dev/html
> # one lintian warning is overridden:
> # - script-not-executable: demo scripts outside of ATH
> dh_lintian -pgromacs-data
> # rename a pair of Perl scripts to drop the .pl extension (Policy 10.4)
> mv /«PKGBUILDDIR»/debian/gromacs/usr/bin/demux.pl     /«PKGBUILDDIR»/debian/gromacs/usr/bin/demux
> mv /«PKGBUILDDIR»/debian/gromacs/usr/bin/xplor2gmx.pl /«PKGBUILDDIR»/debian/gromacs/usr/bin/xplor2gmx
> dh_installdirs -pgromacs-dev
> mv /«PKGBUILDDIR»/debian/gromacs/usr/include /«PKGBUILDDIR»/debian/gromacs-dev/usr/include
> # catch normal libraries plus all applicable MPI variants
> mv /«PKGBUILDDIR»/debian/gromacs/usr/lib/*.so /«PKGBUILDDIR»/debian/gromacs/usr/lib/pkgconfig /«PKGBUILDDIR»/debian/gromacs-dev/usr/lib
> mv /«PKGBUILDDIR»/debian/gromacs-mpich/usr/lib/*.so /«PKGBUILDDIR»/debian/gromacs-dev/usr/lib
> mv: cannot stat `/«PKGBUILDDIR»/debian/gromacs-mpich/usr/lib/*.so': No such file or directory
> make: *** [install] Error 1

The full build log is available from:
   http://people.debian.org/~lucas/logs/2012/07/08/gromacs_4.5.5-2_unstable.log

A list of current common problems and possible solutions is available at 
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.