[Debichem-devel] Bug#714365: Bug#714365: src:openms: FTBFS against glpk 4.51-1

[Filippo Rusconi (lopippo@debian.org)]

Greetings Sebastien,

thank you sooo much for your fix. I was in low internet connectivity
mode these last weeks. 

I'll start packaging the new version of the software project and check
that the fix will be integrated upstream.

Cheers,
Filippo

On Thu, Aug 15, 2013 at 09:50:30PM +0200, Sébastien Villemot wrote:
> Control: tags -1 + pending
> 
> Le vendredi 28 juin 2013 à 15:27 +0200, Sébastien Villemot a écrit :
> > Package: src:openms
> > Version: 1.9.0-4
> 
> > openms fails to build from source against glpk 4.51-1, which is currently
> > available in experimental. A build log is attached to this report.
> 
> I have uploaded to DELAYED/5 a NMU fixing this issue. The debdiff is
> attached. Please let me know if I should delay the upload longer.
> 
> Cheers,
> 

> diff -Nru openms-1.9.0/debian/changelog openms-1.9.0/debian/changelog
> --- openms-1.9.0/debian/changelog	2013-03-29 13:09:59.000000000 +0100
> +++ openms-1.9.0/debian/changelog	2013-08-15 17:54:35.000000000 +0200
> @@ -1,3 +1,11 @@
> +openms (1.9.0-4.1) unstable; urgency=low
> +
> +  * Non-maintainer upload.
> +  * glpk-4.49.patch: new patch, fixes FTBFS against recent versions of
> +    GLPK. (Closes: #714365)
> +
> + -- Sébastien Villemot <sebastien at debian.org>  Thu, 15 Aug 2013 17:54:30 +0200
> +
>  openms (1.9.0-4) unstable; urgency=low
>  
>    * debian/rules: reinstate the .NOTPARALLEL: directive to preclude
> diff -Nru openms-1.9.0/debian/patches/glpk-4.49.patch openms-1.9.0/debian/patches/glpk-4.49.patch
> --- openms-1.9.0/debian/patches/glpk-4.49.patch	1970-01-01 01:00:00.000000000 +0100
> +++ openms-1.9.0/debian/patches/glpk-4.49.patch	2013-08-15 17:51:57.000000000 +0200
> @@ -0,0 +1,19 @@
> +Description: Fix FTBFS against recent versions of GLPK
> +Author: Sébastien Villemot <sebastien at debian.org>
> +Bug-Debian: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=714365
> +Forwarded: no
> +Last-Update: 2013-08-15
> +---
> +This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
> +--- a/include/OpenMS/DATASTRUCTURES/LPWrapper.h
> ++++ b/include/OpenMS/DATASTRUCTURES/LPWrapper.h
> +@@ -36,7 +36,8 @@
> + // only declare them here
> + class CoinModel;
> + #define GLP_PROB_DEFINED
> +-typedef struct { double _opaque_prob[100]; } glp_prob;
> ++struct glp_prob;
> ++typedef struct glp_prob glp_prob;
> + 
> + namespace OpenMS
> + {
> diff -Nru openms-1.9.0/debian/patches/series openms-1.9.0/debian/patches/series
> --- openms-1.9.0/debian/patches/series	2013-03-29 13:09:59.000000000 +0100
> +++ openms-1.9.0/debian/patches/series	2013-08-15 17:43:54.000000000 +0200
> @@ -3,3 +3,4 @@
>  topp-documenter-patch-from-stephan-aiche.patch
>  allow-recent-versions-find-libbost-and-force-shared-lib-use.patch
>  force-use-shared-object-libs-upon-linking.patch
> +glpk-4.49.patch




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-- 

-- 
Filippo Rusconi, PhD - public crypto key C78F687C @ pgp.mit.edu
Researcher at CNRS and Debian Developer <lopippo at debian.org>
Author of ``massXpert''     at http://www.massxpert.org