[Debichem-devel] Bug#731226: avogadro crashes on export image

[fulvio ciriaco]

Package: avogadro
Version: 1.0.3-10+b3
Severity: important
Tags: upstream

Dear Maintainer,
whatever structure I open,
whatever image format I choose,
avogadro crashes while attempting to export image.
When running in gdb, I have the following error:

Program received signal SIGSEGV, Segmentation fault.
0xb7d7d45a in OpenBabel::cross(OpenBabel::vector3 const&, OpenBabel::vector3 const&) () from /usr/lib/libopenbabel.so.4

The header of the backtrace:
#0  0xb7d7d45a in OpenBabel::cross(OpenBabel::vector3 const&, OpenBabel::vector3 const&) () from /usr/lib/libopenbabel.so.4
#1  0xb7d92184 in OpenBabel::CisTransFrom3D(OpenBabel::OBMol*, std::vector<OpenBabel::OBStereoUnit, std::allocator<OpenBabel::OBStereoUnit> > const&, bool) ()
   from /usr/lib/libopenbabel.so.4
#2  0xb7d9a3a2 in OpenBabel::StereoFrom3D(OpenBabel::OBMol*, bool) ()
   from /usr/lib/libopenbabel.so.4
#3  0xb7d9a71f in OpenBabel::PerceiveStereo(OpenBabel::OBMol*, bool) ()
   from /usr/lib/libopenbabel.so.4
#4  0xaf15e696 in OpenBabel::MDLFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*) () from /usr/lib/openbabel/2.3.2/mdlformat.so
#5  0xb7d0c9aa in OpenBabel::OBConversion::Write(OpenBabel::OBBase*, std::ostream*) () from /usr/lib/libopenbabel.so.4
#6  0xb7d0d91f in OpenBabel::OBConversion::WriteString(OpenBabel::OBBase*, bool)
    () from /usr/lib/libopenbabel.so.4

Fulvio


-- System Information:
Debian Release: jessie/sid
  APT prefers testing
  APT policy: (500, 'testing')
Architecture: i386 (i686)

Kernel: Linux 3.10-3-686-pae (SMP w/1 CPU core)
Locale: LANG=it_IT.UTF-8, LC_CTYPE=it_IT.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash

Versions of packages avogadro depends on:
ii  libavogadro1   1.0.3-10+b3
ii  libc6          2.17-93
ii  libgcc1        1:4.8.2-1
ii  libgl2ps0      1.3.8-1
ii  libopenbabel4  2.3.2+dfsg-1+b1
ii  libqt4-opengl  4:4.8.5+git121-g2a9ea11+dfsg1-2
ii  libqtcore4     4:4.8.5+git121-g2a9ea11+dfsg1-2
ii  libqtgui4      4:4.8.5+git121-g2a9ea11+dfsg1-2
ii  libstdc++6     4.8.2-1
ii  libx11-6       2:1.6.2-1

Versions of packages avogadro recommends:
ii  avogadro-data  1.0.3-10

avogadro suggests no packages.

-- no debconf information