[Debichem-devel] Bug#725013: Bug#725013: gromacs-openmpi: grompp crashes with invalid opcode

[Nicholas Breen]

reassign 725013 gromacs
tags 725013 moreinfo
thanks


On Mon, Sep 30, 2013 at 04:39:48PM +0300, Vassilis Virvilis wrote:
> Trying to run grompp grompp_d
> 
>    * What exactly did you do (or not do) that was effective (or
>      ineffective)?
> 
> It crashes
> 
> dmesg output:
> [ 1699.966132] traps: grompp_d[9667] trap invalid opcode ip:7fb9311ac95d sp:7ffff7700ee8 error:0 in libgmx_d.so.8[7fb9310d0000+4e9000]
> [ 1728.255893] traps: grompp[9684] trap invalid opcode ip:7f6807c2c65d sp:7fff560ed648 error:0 in libgmx.so.8[7f6807b51000+51b000]

I can't reproduce this crash with my test data, and my system runs a similar
Intel CPU (i5-2x00 series).  Could you please attach a file that it crashes on
(or a pdb2gmx/genbox/etc. sequence that creates one) and the exact command line
that causes it to fail?


-- 
Nicholas Breen
nbreen at debian.org