[Debichem-devel] Bug#740309: Bug#740309: libpwiz FTBFS: configure: error: cannot compile a test that uses Boost thread

[Aníbal Monsalve Salazar]

On Sun, Mar 02, 2014 at 02:21:58PM +0100, Filippo Rusconi wrote:
> 
> Thanks for the report. Same problem here, I'm investigating this one.

The problem is in libboost1.54-dev, see: https://bugs.debian.org/739807

Dejan found the patch to fix libboost1.54 at:

https://svn.boost.org/trac/boost/changeset/84950

We'll have to wait until #739807 is fixed.

Or you could add a lot of "#include <stdint.h>" in your Debian source
package, like so:

--- a/autotools/configure       2013-06-19 21:48:48.000000000 +0100
+++ b/autotools/configure       2014-02-28 07:18:00.846766821 +0000
@@ -25311,6 +25311,7 @@ _ACEOF
 cat confdefs.h >>conftest.$ac_ext
 cat >>conftest.$ac_ext <<_ACEOF
 /* end confdefs.h.  */
+#include <stdint.h>
 #include <boost/thread.hpp>

 int
--- a/pwiz/data/identdata/Serializer_pepXML.cpp 2013-05-30 05:12:05.000000000 +1000
+++ b/pwiz/data/identdata/Serializer_pepXML.cpp 2014-02-28 19:18:13.516053984 +1100
@@ -22,6 +22,7 @@
 ^M
 #define PWIZ_SOURCE^M
 ^M
+#include <stdint.h>
 #include "Serializer_pepXML.hpp"^M
 #include "pwiz/utility/minimxml/XMLWriter.hpp"^M
 #include "pwiz/utility/minimxml/SAXParser.hpp"^M
--- a/pwiz/data/identdata/Serializer_protXML.cpp        2013-05-30 05:12:05.000000000 +1000
+++ b/pwiz/data/identdata/Serializer_protXML.cpp        2014-02-28 19:56:03.803043627 +1100
@@ -25,6 +25,7 @@

 #define PWIZ_SOURCE

+#include <stdint.h>
 #include "Serializer_protXML.hpp"
 #include "pwiz/utility/minimxml/XMLWriter.hpp"
 #include "pwiz/utility/minimxml/SAXParser.hpp"
[...]
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