[Debichem-devel] Bug#769550: debichem-abinitio: package fails to upgrade properly from wheezy
Lucas Nussbaum
lucas at lucas-nussbaum.net
Fri Nov 14 12:14:52 UTC 2014
Package: debichem-abinitio
Version: 0.0.3
Severity: serious
User: debian-qa at lists.debian.org
Usertags: instest-20141114 instest
Hi,
While testing the installation of all packages in jessie, I ran
into the following problem:
> -- Now testing upgrade from wheezy-instest.
> -- Finding version in wheezy-instest: debichem-abinitio 0.0.3
> -- Installing debichem-abinitio in wheezy-instest: OK
> Reading package lists...
> Building dependency tree...
> Reading state information...
> Starting
> Starting 2
> Done
> The following extra packages will be installed:
> abinit aces3 adduser blcr-util cp2k cp2k-data debichem-tasks dmidecode
> laptop-detect libblacs-mpi1 libblas3 libblas3gf libcr0 libfftw3-3
> libgfortran3 libgomp1 libibverbs1 libint1 liblapack3 liblapack3gf
> liblocale-gettext-perl libnuma1 libopenmpi1.3 libquadmath0 libsc-data libsc7
> libscalapack-mpi1 libtorque2 mpi-default-bin mpqc nwchem nwchem-data
> openmpi-bin openmpi-checkpoint openmpi-common openmx psi3 quantum-espresso
> quantum-espresso-data tasksel tasksel-data
> Suggested packages:
> abinit-doc perl-modules blcr-dkms libfftw3-bin libfftw3-dev scalapack-doc
> mpqc-support gfortran
> The following NEW packages will be installed:
> abinit aces3 adduser blcr-util cp2k cp2k-data debichem-abinitio
> debichem-tasks dmidecode laptop-detect libblacs-mpi1 libblas3 libblas3gf
> libcr0 libfftw3-3 libgfortran3 libgomp1 libibverbs1 libint1 liblapack3
> liblapack3gf liblocale-gettext-perl libnuma1 libopenmpi1.3 libquadmath0
> libsc-data libsc7 libscalapack-mpi1 libtorque2 mpi-default-bin mpqc nwchem
> nwchem-data openmpi-bin openmpi-checkpoint openmpi-common openmx psi3
> quantum-espresso quantum-espresso-data tasksel tasksel-data
> 0 upgraded, 42 newly installed, 0 to remove and 0 not upgraded.
> Need to get 136 MB of archives.
> After this operation, 598 MB of additional disk space will be used.
> Get:1 http://localhost/debian/ wheezy/main liblocale-gettext-perl amd64 1.05-7+b1 [20.4 kB]
> Get:2 http://localhost/debian/ wheezy/main tasksel-data all 3.14.1 [20.6 kB]
> Get:3 http://localhost/debian/ wheezy/main tasksel all 3.14.1 [94.8 kB]
> Get:4 http://localhost/debian/ wheezy/main libgomp1 amd64 4.7.2-5 [27.5 kB]
> Get:5 http://localhost/debian/ wheezy/main libfftw3-3 amd64 3.3.2-3.1 [1665 kB]
> Get:6 http://localhost/debian/ wheezy/main libquadmath0 amd64 4.7.2-5 [125 kB]
> Get:7 http://localhost/debian/ wheezy/main libgfortran3 amd64 4.7.2-5 [351 kB]
> Get:8 http://localhost/debian/ wheezy/main adduser all 3.113+nmu3 [264 kB]
> Get:9 http://localhost/debian/ wheezy/main dmidecode amd64 2.11-9 [77.1 kB]
> Get:10 http://localhost/debian/ wheezy/main libblas3 amd64 1.2.20110419-5 [293 kB]
> Get:11 http://localhost/debian/ wheezy/main liblapack3 amd64 3.4.1+dfsg-1+deb70u1 [5036 kB]
> Get:12 http://localhost/debian/ wheezy/main libibverbs1 amd64 1.1.6-1 [35.3 kB]
> Get:13 http://localhost/debian/ wheezy/main libnuma1 amd64 2.0.8~rc4-1 [33.7 kB]
> Get:14 http://localhost/debian/ wheezy/main libtorque2 amd64 2.4.16+dfsg-1+deb7u3 [121 kB]
> Get:15 http://localhost/debian/ wheezy/main libopenmpi1.3 amd64 1.4.5-1 [1436 kB]
> Get:16 http://localhost/debian/ wheezy/main aces3 amd64 3.0.6-7 [12.6 MB]
> Get:17 http://localhost/debian/ wheezy/main libcr0 amd64 0.8.5-2 [36.9 kB]
> Get:18 http://localhost/debian/ wheezy/main blcr-util amd64 0.8.5-2 [43.7 kB]
> Get:19 http://localhost/debian/ wheezy/main openmpi-common all 1.4.5-1 [101 kB]
> Get:20 http://localhost/debian/ wheezy/main openmpi-bin amd64 1.4.5-1 [166 kB]
> Get:21 http://localhost/debian/ wheezy/main mpi-default-bin amd64 1.0.1 [2990 B]
> Get:22 http://localhost/debian/ wheezy/main libblacs-mpi1 amd64 1.1-31 [68.4 kB]
> Get:23 http://localhost/debian/ wheezy/main libint1 amd64 1.1.4-1 [971 kB]
> Get:24 http://localhost/debian/ wheezy/main libblas3gf all 1.2.20110419-5 [8090 B]
> Get:25 http://localhost/debian/ wheezy/main liblapack3gf all 3.4.1+dfsg-1+deb70u1 [10.5 kB]
> Get:26 http://localhost/debian/ wheezy/main libscalapack-mpi1 amd64 1.8.0-9 [3201 kB]
> Get:27 http://localhost/debian/ wheezy/main cp2k-data all 2.2.426-8 [9358 kB]
> Get:28 http://localhost/debian/ wheezy/main cp2k amd64 2.2.426-8 [12.5 MB]
> Get:29 http://localhost/debian/ wheezy/main laptop-detect amd64 0.13.7 [5224 B]
> Get:30 http://localhost/debian/ wheezy/main libsc-data all 2.3.1-14 [313 kB]
> Get:31 http://localhost/debian/ wheezy/main libsc7 amd64 2.3.1-14 [3243 kB]
> Get:32 http://localhost/debian/ wheezy/main mpqc amd64 2.3.1-14 [124 kB]
> Get:33 http://localhost/debian/ wheezy/main nwchem-data all 6.1-6 [9326 kB]
> Get:34 http://localhost/debian/ wheezy/main nwchem amd64 6.1-6 [14.1 MB]
> Get:35 http://localhost/debian/ wheezy/main psi3 amd64 3.4.0-4 [6806 kB]
> Get:36 http://localhost/debian/ wheezy/main quantum-espresso amd64 5.0-1 [41.1 MB]
> Get:37 http://localhost/debian/ wheezy/main quantum-espresso-data all 5.0-1 [6392 kB]
> Get:38 http://localhost/debian/ wheezy/main abinit amd64 5.3.4.dfsg-3 [5009 kB]
> Get:39 http://localhost/debian/ wheezy/main debichem-tasks all 0.0.3 [3296 B]
> Get:40 http://localhost/debian/ wheezy/main debichem-abinitio all 0.0.3 [4758 B]
> Get:41 http://localhost/debian/ wheezy/main openmpi-checkpoint amd64 1.4.5-1 [96.8 kB]
> Get:42 http://localhost/debian/ wheezy/main openmx amd64 3.5-1 [1031 kB]
> Extracting templates from packages: 71%
Extracting templates from packages: 100%
> Preconfiguring packages ...
> Fetched 136 MB in 6s (22.2 MB/s)
> Selecting previously unselected package liblocale-gettext-perl.
> (Reading database ... 6634 files and directories currently installed.)
> Unpacking liblocale-gettext-perl (from .../liblocale-gettext-perl_1.05-7+b1_amd64.deb) ...
> Selecting previously unselected package tasksel-data.
> Unpacking tasksel-data (from .../tasksel-data_3.14.1_all.deb) ...
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> Unpacking tasksel (from .../tasksel_3.14.1_all.deb) ...
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> Unpacking libgomp1:amd64 (from .../libgomp1_4.7.2-5_amd64.deb) ...
> Selecting previously unselected package libfftw3-3:amd64.
> Unpacking libfftw3-3:amd64 (from .../libfftw3-3_3.3.2-3.1_amd64.deb) ...
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> Unpacking libquadmath0:amd64 (from .../libquadmath0_4.7.2-5_amd64.deb) ...
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> Unpacking libblas3 (from .../libblas3_1.2.20110419-5_amd64.deb) ...
> Selecting previously unselected package liblapack3.
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> Unpacking quantum-espresso-data (from .../quantum-espresso-data_5.0-1_all.deb) ...
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> Unpacking debichem-tasks (from .../debichem-tasks_0.0.3_all.deb) ...
> Selecting previously unselected package debichem-abinitio.
> Unpacking debichem-abinitio (from .../debichem-abinitio_0.0.3_all.deb) ...
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> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libslang2:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libss2:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libstdc++6:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libtinfo5:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libtorque2.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libusb-0.1-4:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libustr-1.0-1:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libuuid1:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/nvi.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/readline-common.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/sensible-utils.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/sysv-rc.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/tar.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/tasksel.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/tzdata.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/util-linux.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/zlib1g:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/apt.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/dash.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/debconf.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/debichem-abinitio.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/dpkg.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/e2fsprogs.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/findutils.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/gnupg.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/initscripts.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libblas3.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libc6:amd64.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/liblapack3.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libpam-modules:amd64.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/login.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/mount.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/passwd.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/sysv-rc.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/util-linux.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/bash.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/bsdutils.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/dash.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/debconf.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/debichem-abinitio.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/dpkg.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/less.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libblas3.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libblas3gf.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libc6:amd64.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/liblapack3.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/liblapack3gf.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libpam-runtime.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/mawk.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/mount.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/nvi.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/openmpi-bin.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/sysv-rc.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/tar.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/util-linux.prerm
> Setting up liblocale-gettext-perl (1.05-7+b1) ...
> Setting up libgomp1:amd64 (4.7.2-5) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up libfftw3-3:amd64 (3.3.2-3.1) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up libquadmath0:amd64 (4.7.2-5) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up libgfortran3:amd64 (4.7.2-5) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up adduser (3.113+nmu3) ...
> + set -e
> + [ ! -e /etc/adduser.conf ]
> + cp /usr/share/adduser/adduser.conf /etc/adduser.conf
> + . /usr/share/debconf/confmodule
> + [ ! ]
> + PERL_DL_NONLAZY=1
> + export PERL_DL_NONLAZY
> + [ ]
> + exec /usr/share/debconf/frontend /var/lib/dpkg/info/adduser.postinst configure
> + set -e
> + [ ! -e /etc/adduser.conf ]
> + . /usr/share/debconf/confmodule
> + [ ! 1 ]
> + [ -z ]
> + exec
> + [ ]
> + exec
> + DEBCONF_REDIR=1
> + export DEBCONF_REDIR
> + db_get adduser/homedir-changed
> + _db_cmd GET adduser/homedir-changed
> + _db_internal_IFS=
>
> + IFS=
> + printf %s\n GET adduser/homedir-changed
> + IFS=
>
> + IFS=
> read -r _db_internal_line
> + RET=10 adduser/homedir-changed doesn't exist
> + return 10
> + RET=false
> + [ false != true ]
> + db_get adduser/homedir-permission
> + _db_cmd GET adduser/homedir-permission
> + _db_internal_IFS=
>
> + IFS=
> + printf %s\n GET adduser/homedir-permission
> + IFS=
>
> + IFS=
> read -r _db_internal_line
> + RET=true
> + return 0
> + [ true = false ]
> + NEW_PERMISSION=0755
> + grep -q ^DIR_MODE= /etc/adduser.conf
> + cat /etc/adduser.conf
> + sed -ne s/^DIR_MODE=\([0-9]*\).*$/\1/p
> + OLD_PERMISSION=0755
> + [ 0755 != 0755 ]
> Setting up dmidecode (2.11-9) ...
> Setting up libblas3 (1.2.20110419-5) ...
> + set -e
> + update-alternatives --install /usr/lib/libblas.so.3 libblas.so.3 /usr/lib/libblas/libblas.so.3 10 --slave /usr/lib/libblas.so.3gf libblas.so.3gf /usr/lib/libblas/libblas.so.3
> update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
> + exit 0
> Setting up liblapack3 (3.4.1+dfsg-1+deb70u1) ...
> + set -e
> + . /usr/share/debconf/confmodule
> + [ ! ]
> + PERL_DL_NONLAZY=1
> + export PERL_DL_NONLAZY
> + [ ]
> + exec /usr/share/debconf/frontend /var/lib/dpkg/info/liblapack3.postinst configure
> + set -e
> + . /usr/share/debconf/confmodule
> + [ ! 1 ]
> + [ -z ]
> + exec
> + [ ]
> + exec
> + DEBCONF_REDIR=1
> + export DEBCONF_REDIR
> + update-alternatives --install /usr/lib/liblapack.so.3 liblapack.so.3 /usr/lib/lapack/liblapack.so.3 10 --slave /usr/lib/liblapack.so.3gf liblapack.so.3gf /usr/lib/lapack/liblapack.so.3
> update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
> + exit 0
> Setting up libibverbs1 (1.1.6-1) ...
> + set -e
> + [ configure = configure ]
> + getent group rdma
> + addgroup --system --quiet rdma
> + [ configure = configure ]
> + ldconfig
> Setting up libnuma1 (2.0.8~rc4-1) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up libtorque2 (2.4.16+dfsg-1+deb7u3) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up libopenmpi1.3 (1.4.5-1) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up aces3 (3.0.6-7) ...
> Setting up libcr0 (0.8.5-2) ...
> + [ configure = configure ]
> + ldconfig
> + [ configure = configure ]
> + ldconfig
> Setting up blcr-util (0.8.5-2) ...
> Setting up openmpi-common (1.4.5-1) ...
> Setting up openmpi-bin (1.4.5-1) ...
> + set -e
> + [ != ]
> + update-alternatives --install /usr/bin/mpirun mpirun /usr/bin/mpirun.openmpi 50 --slave /usr/share/man/man1/mpirun.1.gz mpirun.1.gz /usr/share/man/man1/mpirun.openmpi.1.gz --slave /usr/bin/mpiexec mpiexec /usr/bin/mpiexec.openmpi --slave /usr/share/man/man1/mpiexec.1.gz mpiexec.1.gz /usr/share/man/man1/mpiexec.openmpi.1.gz
> update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
> + exit 0
> Setting up mpi-default-bin (1.0.1) ...
> Setting up libblacs-mpi1 (1.1-31) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up libint1 (1.1.4-1) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up libblas3gf (1.2.20110419-5) ...
> + set -e
> + update-alternatives --remove libblas.so.3gf /usr/lib/libblas/libblas.so.3
> + exit 0
> Setting up liblapack3gf (3.4.1+dfsg-1+deb70u1) ...
> + set -e
> + . /usr/share/debconf/confmodule
> + [ ! ]
> + PERL_DL_NONLAZY=1
> + export PERL_DL_NONLAZY
> + [ ]
> + exec /usr/share/debconf/frontend /var/lib/dpkg/info/liblapack3gf.postinst configure
> + set -e
> + . /usr/share/debconf/confmodule
> + [ ! 1 ]
> + [ -z ]
> + exec
> + [ ]
> + exec
> + DEBCONF_REDIR=1
> + export DEBCONF_REDIR
> + update-alternatives --remove liblapack.so.3gf /usr/lib/liblapack/liblapack.so.3
> + exit 0
> Setting up libscalapack-mpi1 (1.8.0-9) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up cp2k-data (2.2.426-8) ...
> Setting up cp2k (2.2.426-8) ...
> Setting up laptop-detect (0.13.7) ...
> Setting up libsc-data (2.3.1-14) ...
> Setting up libsc7 (2.3.1-14) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up mpqc (2.3.1-14) ...
> Setting up nwchem-data (6.1-6) ...
> Setting up nwchem (6.1-6) ...
> Setting up psi3 (3.4.0-4) ...
> Setting up quantum-espresso (5.0-1) ...
> Setting up quantum-espresso-data (5.0-1) ...
> Setting up abinit (5.3.4.dfsg-3) ...
> Setting up openmpi-checkpoint (1.4.5-1) ...
> Setting up openmx (3.5-1) ...
> Setting up tasksel-data (3.14.1) ...
> + set -e
> + dpkg --compare-versions lt 3.14
> + [ ! -L /usr/share/doc/tasksel-data ]
> Setting up tasksel (3.14.1) ...
> + set -e
> + . /usr/share/debconf/confmodule
> + [ ! ]
> + PERL_DL_NONLAZY=1
> + export PERL_DL_NONLAZY
> + [ ]
> + exec /usr/share/debconf/frontend /var/lib/dpkg/info/tasksel.postinst configure
> + set -e
> + . /usr/share/debconf/confmodule
> + [ ! 1 ]
> + [ -z ]
> + exec
> + [ ]
> + exec
> + DEBCONF_REDIR=1
> + export DEBCONF_REDIR
> + [ configure = configure ]
> + which update-menus
> + [ -x ]
> Setting up debichem-tasks (0.0.3) ...
> Setting up debichem-abinitio (0.0.3) ...
> + set -e
> + [ -d /etc/blends -a -f /etc/blends/blends.conf ]
> + exit 0
> -- Upgrading distribution: FAILED
> ## Updating /etc/apt/sources.list...
> ## Running apt-get update...
> Get:1 http://localhost jessie Release.gpg [836 B]
> Get:2 http://localhost jessie Release [190 kB]
> Get:3 http://localhost jessie/main Translation-en [4632 kB]
> Get:4 http://localhost jessie/main amd64 Packages [9107 kB]
> Fetched 13.9 MB in 1s (7459 kB/s)
> Reading package lists...
> ## Running apt-get -y upgrade...
> Reading package lists...
> Building dependency tree...
> Reading state information...
> Entering ResolveByKeep
> Dependencies are not satisfied for util-linux [ amd64 ] < 2.20.1-5.3 -> 2.25.2-2 > ( utils )
> Keeping package util-linux:amd64
> Dependencies are not satisfied for sysvinit-utils [ amd64 ] < 2.88dsf-41+deb7u1 -> 2.88dsf-57 > ( admin )
> Keeping package sysvinit-utils:amd64
> Dependencies are not satisfied for mount [ amd64 ] < 2.20.1-5.3 -> 2.25.2-2 > ( admin )
> Keeping package mount:amd64
> Dependencies are not satisfied for libc-bin [ amd64 ] < 2.13-38+deb7u6 -> 2.19-13 > ( libs )
> Keeping package libc-bin:amd64
> Dependencies are not satisfied for login [ amd64 ] < 1:4.1.5.1-1 -> 1:4.2-2+b2 > ( admin )
> Keeping package login:amd64
> Dependencies are not satisfied for bsdutils [ amd64 ] < 1:2.20.1-5.3 -> 1:2.25.2-2 > ( utils )
> Keeping package bsdutils:amd64
> Dependencies are not satisfied for base-passwd [ amd64 ] < 3.5.26 -> 3.5.37 > ( admin )
> Keeping package base-passwd:amd64
> Dependencies are not satisfied for grep [ amd64 ] < 2.12-2 -> 2.20-4 > ( utils )
> Keeping package grep:amd64
> Dependencies are not satisfied for sysvinit [ amd64 ] < 2.88dsf-41+deb7u1 -> 2.88dsf-57 > ( admin )
> Keeping package sysvinit:amd64
> Dependencies are not satisfied for libselinux1 [ amd64 ] < 2.1.9-5 -> 2.3-2 > ( libs )
> Keeping package libselinux1:amd64
> Dependencies are not satisfied for dpkg [ amd64 ] < 1.16.15 -> 1.17.21 > ( admin )
> Keeping package dpkg:amd64
> Dependencies are not satisfied for coreutils [ amd64 ] < 8.13-3.5 -> 8.23-3 > ( utils )
> Keeping package coreutils:amd64
> Dependencies are not satisfied for libgcc1 [ amd64 ] < 1:4.7.2-5 -> 1:4.9.1-19 > ( libs )
> Keeping package libgcc1:amd64
> Dependencies are not satisfied for libpam0g [ amd64 ] < 1.1.3-7.1 -> 1.1.8-3.1 > ( libs )
> Keeping package libpam0g:amd64
> Dependencies are not satisfied for libstdc++6 [ amd64 ] < 4.7.2-5 -> 4.9.1-19 > ( libs )
> Keeping package libstdc++6:amd64
> Dependencies are not satisfied for apt [ amd64 ] < 0.9.7.9+deb7u6 -> 1.0.9.3 > ( admin )
> Keeping package apt:amd64
> Dependencies are not satisfied for libapt-pkg4.12 [ amd64 ] < 0.9.7.9+deb7u6 -> 1.0.9.3 > ( libs )
> Keeping package libapt-pkg4.12:amd64
> Dependencies are not satisfied for libpam-modules [ amd64 ] < 1.1.3-7.1 -> 1.1.8-3.1 > ( admin )
> Keeping package libpam-modules:amd64
> Dependencies are not satisfied for libpam-modules [ amd64 ] < 1.1.3-7.1 -> 1.1.8-3.1 > ( admin )
> Package libpam-modules:amd64 libpam-modules:amd64 PreDepends on libpam-modules-bin [ amd64 ] < 1.1.3-7.1 -> 1.1.8-3.1 > ( admin ) (= 1.1.3-7.1)
> Keeping Package libpam-modules-bin:amd64 due to PreDepends
> Dependencies are not satisfied for initscripts [ amd64 ] < 2.88dsf-41+deb7u1 -> 2.88dsf-57 > ( admin )
> Keeping package initscripts:amd64
> Dependencies are not satisfied for libquadmath0 [ amd64 ] < 4.7.2-5 -> 4.9.1-19 > ( libs )
> Keeping package libquadmath0:amd64
> Dependencies are not satisfied for libgfortran3 [ amd64 ] < 4.7.2-5 -> 4.9.1-19 > ( libs )
> Keeping package libgfortran3:amd64
> Dependencies are not satisfied for libblas3 [ amd64 ] < 1.2.20110419-5 -> 1.2.20110419-10 > ( libs )
> Keeping package libblas3:amd64
> Dependencies are not satisfied for apt-utils [ amd64 ] < 0.9.7.9+deb7u6 -> 1.0.9.3 > ( admin )
> Keeping package apt-utils:amd64
> Dependencies are not satisfied for passwd [ amd64 ] < 1:4.1.5.1-1 -> 1:4.2-2+b2 > ( admin )
> Keeping package passwd:amd64
> Dependencies are not satisfied for sysv-rc [ amd64 ] < 2.88dsf-41+deb7u1 -> 2.88dsf-57 > ( admin )
> Keeping package sysv-rc:amd64
> Dependencies are not satisfied for libsemanage1 [ amd64 ] < 2.1.6-6 -> 2.3-1 > ( libs )
> Keeping package libsemanage1:amd64
> Dependencies are not satisfied for libsemanage1 [ amd64 ] < 2.1.6-6 -> 2.3-1 > ( libs )
> Package libsemanage1:amd64 libsemanage1:amd64 Depends on libsemanage-common [ amd64 ] < 2.1.6-6 -> 2.3-1 > ( libs ) (= 2.1.6-6)
> Keeping Package libsemanage-common:amd64 due to Depends
> Dependencies are not satisfied for openmpi-bin [ amd64 ] < 1.4.5-1 -> 1.6.5-9 > ( net )
> Keeping package openmpi-bin:amd64
> Dependencies are not satisfied for openmpi-bin [ amd64 ] < 1.4.5-1 -> 1.6.5-9 > ( net )
> Package openmpi-bin:amd64 openmpi-bin:amd64 Depends on openmpi-common [ amd64 ] < 1.4.5-1 -> 1.6.5-9 > ( net ) (= 1.4.5-1)
> Keeping Package openmpi-common:amd64 due to Depends
> Dependencies are not satisfied for libsc7 [ amd64 ] < 2.3.1-14 -> 2.3.1-16 > ( libs )
> Keeping package libsc7:amd64
> Dependencies are not satisfied for libsc7 [ amd64 ] < 2.3.1-14 -> 2.3.1-16 > ( libs )
> Package libsc7:amd64 libsc7:amd64 Depends on libsc-data [ amd64 ] < 2.3.1-14 -> 2.3.1-16 > ( libs ) (= 2.3.1-14)
> Keeping Package libsc-data:amd64 due to Depends
> Dependencies are not satisfied for mpqc [ amd64 ] < 2.3.1-14 -> 2.3.1-16 > ( science )
> Keeping package mpqc:amd64
> Dependencies are not satisfied for libgomp1 [ amd64 ] < 4.7.2-5 -> 4.9.1-19 > ( libs )
> Keeping package libgomp1:amd64
> Dependencies are not satisfied for quantum-espresso [ amd64 ] < 5.0-1 -> 5.1+dfsg-3 > ( science )
> Keeping package quantum-espresso:amd64
> Dependencies are not satisfied for aces3 [ amd64 ] < 3.0.6-7 -> 3.0.8-1 > ( science )
> Keeping package aces3:amd64
> Dependencies are not satisfied for cp2k [ amd64 ] < 2.2.426-8 -> 2.5.1-3 > ( science )
> Keeping package cp2k:amd64
> Dependencies are not satisfied for cp2k [ amd64 ] < 2.2.426-8 -> 2.5.1-3 > ( science )
> Package cp2k:amd64 cp2k:amd64 Depends on cp2k-data [ amd64 ] < 2.2.426-8 -> 2.5.1-3 > ( science ) (= 2.2.426-8)
> Keeping Package cp2k-data:amd64 due to Depends
> Dependencies are not satisfied for nwchem [ amd64 ] < 6.1-6 -> 6.5+r26243-2 > ( science )
> Keeping package nwchem:amd64
> Dependencies are not satisfied for nwchem [ amd64 ] < 6.1-6 -> 6.5+r26243-2 > ( science )
> Package nwchem:amd64 nwchem:amd64 Depends on nwchem-data [ amd64 ] < 6.1-6 -> 6.5+r26243-2 > ( science ) (= 6.1-6)
> Keeping Package nwchem-data:amd64 due to Depends
> Dependencies are not satisfied for libfftw3-3 [ amd64 ] < 3.3.2-3.1 -> 3.3.4-1.1 > ( libs )
> Keeping package libfftw3-3:amd64
> Dependencies are not satisfied for openmx [ amd64 ] < 3.5-1 -> 3.7.6-1 > ( science )
> Keeping package openmx:amd64
> Dependencies are not satisfied for nvi [ amd64 ] < 1.81.6-8.2 -> 1.81.6-11+b1 > ( editors )
> Keeping package nvi:amd64
> Dependencies are not satisfied for abinit [ amd64 ] < 5.3.4.dfsg-3 -> 7.8.2-2 > ( science )
> Keeping package abinit:amd64
> Dependencies are not satisfied for openmpi-checkpoint [ amd64 ] < 1.4.5-1 -> 1.6.5-9 > ( net )
> Keeping package openmpi-checkpoint:amd64
> The following packages have been kept back:
> abinit aces3 apt apt-utils base-passwd bsdutils coreutils cp2k cp2k-data
> dpkg grep initscripts libapt-pkg4.12 libblas3 libc-bin libfftw3-3 libgcc1
> libgfortran3 libgomp1 libpam-modules libpam-modules-bin libpam0g
> libquadmath0 libsc-data libsc7 libselinux1 libsemanage-common libsemanage1
> libstdc++6 login mount mpqc nvi nwchem nwchem-data openmpi-bin
> openmpi-checkpoint openmpi-common openmx passwd quantum-espresso sysv-rc
> sysvinit sysvinit-utils util-linux
> The following packages will be upgraded:
> base-files bash blcr-util dash debconf debfoster debian-archive-keyring
> debianutils diffutils dmidecode e2fslibs e2fsprogs findutils gnupg gpgv gzip
> hostname less libacl1 libapt-inst1.5 libattr1 libblas3gf libblkid1
> libbz2-1.0 libc6 libcomerr2 libcr0 libgc1c2 libibverbs1 libint1 liblapack3
> liblapack3gf liblocale-gettext-perl liblzma5 libmount1 libncurses5
> libncursesw5 libnuma1 libpam-runtime libreadline6 libsepol1 libslang2 libss2
> libtinfo5 libtorque2 libusb-0.1-4 libuuid1 lsb-base mpi-default-bin
> multiarch-support ncurses-base ncurses-bin perl-base psi3
> quantum-espresso-data readline-common sed sensible-utils tar tasksel
> tasksel-data tzdata zlib1g
> 63 upgraded, 0 newly installed, 0 to remove and 45 not upgraded.
> Need to get 33.7 MB of archives.
> After this operation, 23.6 MB of additional disk space will be used.
> Get:1 http://localhost/debian/ jessie/main base-files amd64 7.10 [77.7 kB]
> Get:2 http://localhost/debian/ jessie/main libc6 amd64 2.19-13 [4660 kB]
> Get:3 http://localhost/debian/ jessie/main sensible-utils all 0.0.9 [11.3 kB]
> Get:4 http://localhost/debian/ jessie/main debianutils amd64 4.4+b1 [99.1 kB]
> Get:5 http://localhost/debian/ jessie/main bash amd64 4.3-11 [1174 kB]
> Get:6 http://localhost/debian/ jessie/main dash amd64 0.5.7-4+b1 [109 kB]
> Get:7 http://localhost/debian/ jessie/main diffutils amd64 1:3.3-1+b1 [267 kB]
> Get:8 http://localhost/debian/ jessie/main e2fslibs amd64 1.42.12-1 [185 kB]
> Get:9 http://localhost/debian/ jessie/main e2fsprogs amd64 1.42.12-1 [751 kB]
> Get:10 http://localhost/debian/ jessie/main findutils amd64 4.4.2-9+b1 [485 kB]
> Get:11 http://localhost/debian/ jessie/main gzip amd64 1.6-4 [111 kB]
> Get:12 http://localhost/debian/ jessie/main hostname amd64 3.15 [13.9 kB]
> Get:13 http://localhost/debian/ jessie/main libncursesw5 amd64 5.9+20140913-1 [123 kB]
> Get:14 http://localhost/debian/ jessie/main libtinfo5 amd64 5.9+20140913-1 [282 kB]
> Get:15 http://localhost/debian/ jessie/main libncurses5 amd64 5.9+20140913-1 [96.7 kB]
> Get:16 http://localhost/debian/ jessie/main ncurses-bin amd64 5.9+20140913-1 [346 kB]
> Get:17 http://localhost/debian/ jessie/main perl-base amd64 5.20.1-2 [1202 kB]
> Get:18 http://localhost/debian/ jessie/main liblocale-gettext-perl amd64 1.05-8+b1 [19.0 kB]
> Get:19 http://localhost/debian/ jessie/main sed amd64 4.2.2-4+b1 [243 kB]
> Get:20 http://localhost/debian/ jessie/main tar amd64 1.27.1-2+b1 [676 kB]
> Get:21 http://localhost/debian/ jessie/main ncurses-base all 5.9+20140913-1 [222 kB]
> Get:22 http://localhost/debian/ jessie/main libbz2-1.0 amd64 1.0.6-7+b1 [43.4 kB]
> Get:23 http://localhost/debian/ jessie/main readline-common all 6.3-8 [57.7 kB]
> Get:24 http://localhost/debian/ jessie/main libreadline6 amd64 6.3-8+b1 [143 kB]
> Get:25 http://localhost/debian/ jessie/main libslang2 amd64 2.3.0-2 [491 kB]
> Get:26 http://localhost/debian/ jessie/main libusb-0.1-4 amd64 2:0.1.12-25 [21.9 kB]
> Get:27 http://localhost/debian/ jessie/main debconf all 1.5.53 [168 kB]
> Get:28 http://localhost/debian/ jessie/main libattr1 amd64 1:2.4.47-2 [18.3 kB]
> Get:29 http://localhost/debian/ jessie/main libacl1 amd64 2.2.52-2 [27.9 kB]
> Get:30 http://localhost/debian/ jessie/main libuuid1 amd64 2.25.2-2 [63.7 kB]
> Get:31 http://localhost/debian/ jessie/main libblkid1 amd64 2.25.2-2 [155 kB]
> Get:32 http://localhost/debian/ jessie/main libcomerr2 amd64 1.42.12-1 [60.4 kB]
> Get:33 http://localhost/debian/ jessie/main liblzma5 amd64 5.1.1alpha+20120614-2+b1 [194 kB]
> Get:34 http://localhost/debian/ jessie/main libmount1 amd64 2.25.2-2 [163 kB]
> Get:35 http://localhost/debian/ jessie/main libsepol1 amd64 2.3-2 [127 kB]
> Get:36 http://localhost/debian/ jessie/main libss2 amd64 1.42.12-1 [64.7 kB]
> Get:37 http://localhost/debian/ jessie/main zlib1g amd64 1:1.2.8.dfsg-2 [88.2 kB]
> Get:38 http://localhost/debian/ jessie/main libapt-inst1.5 amd64 1.0.9.3 [168 kB]
> Get:39 http://localhost/debian/ jessie/main tasksel-data all 3.29 [18.1 kB]
> Get:40 http://localhost/debian/ jessie/main tasksel all 3.29 [95.4 kB]
> Get:41 http://localhost/debian/ jessie/main libgc1c2 amd64 1:7.2d-6.4 [132 kB]
> Get:42 http://localhost/debian/ jessie/main libnuma1 amd64 2.0.10-1 [32.5 kB]
> Get:43 http://localhost/debian/ jessie/main gpgv amd64 1.4.18-4 [206 kB]
> Get:44 http://localhost/debian/ jessie/main debian-archive-keyring all 2014.1 [30.1 kB]
> Get:45 http://localhost/debian/ jessie/main gnupg amd64 1.4.18-4 [1143 kB]
> Get:46 http://localhost/debian/ jessie/main libpam-runtime all 1.1.8-3.1 [212 kB]
> Get:47 http://localhost/debian/ jessie/main lsb-base all 4.1+Debian13+nmu1 [26.7 kB]
> Get:48 http://localhost/debian/ jessie/main multiarch-support amd64 2.19-13 [178 kB]
> Get:49 http://localhost/debian/ jessie/main tzdata all 2014i-1 [189 kB]
> Get:50 http://localhost/debian/ jessie/main dmidecode amd64 2.12-3 [64.4 kB]
> Get:51 http://localhost/debian/ jessie/main less amd64 458-3 [124 kB]
> Get:52 http://localhost/debian/ jessie/main libcr0 amd64 0.8.5-2.1 [32.4 kB]
> Get:53 http://localhost/debian/ jessie/main blcr-util amd64 0.8.5-2.1 [40.4 kB]
> Get:54 http://localhost/debian/ jessie/main debfoster amd64 2.7-2 [36.9 kB]
> Get:55 http://localhost/debian/ jessie/main libblas3gf all 1.2.20110419-10 [8640 B]
> Get:56 http://localhost/debian/ jessie/main libint1 amd64 1.1.5-1 [1110 kB]
> Get:57 http://localhost/debian/ jessie/main liblapack3 amd64 3.5.0-4 [1852 kB]
> Get:58 http://localhost/debian/ jessie/main liblapack3gf all 3.5.0-4 [12.5 kB]
> Get:59 http://localhost/debian/ jessie/main libtorque2 amd64 2.4.16+dfsg-1.5 [105 kB]
> Get:60 http://localhost/debian/ jessie/main psi3 amd64 3.4.0-5 [3696 kB]
> Get:61 http://localhost/debian/ jessie/main quantum-espresso-data all 5.1+dfsg-3 [11.1 MB]
> Get:62 http://localhost/debian/ jessie/main libibverbs1 amd64 1.1.8-1 [32.0 kB]
> Get:63 http://localhost/debian/ jessie/main mpi-default-bin amd64 1.0.2+nmu2 [3356 B]
> Extracting templates from packages: 47%
Extracting templates from packages: 95%
Extracting templates from packages: 100%
> Preconfiguring packages ...
> Fetched 33.7 MB in 1s (19.6 MB/s)
> (Reading database ... 11626 files and directories currently installed.)
> Preparing to replace base-files 7.1wheezy7 (using .../base-files_7.10_amd64.deb) ...
> Unpacking replacement base-files ...
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/base-files.postinst
> Setting up base-files (7.10) ...
> Installing new version of config file /etc/debian_version ...
> Installing new version of config file /etc/issue ...
> Installing new version of config file /etc/issue.net ...
> + set -e
> + [ ! -e /etc/dpkg/origins/default ]
> + [ configure = configure ]
> + [ 7.1wheezy7 = ]
> + [ ! -d /var/lib/dpkg ]
> + [ ! -f /var/lib/dpkg/status ]
> + [ ! -f /usr/info/dir ]
> + [ ! -f /usr/share/info/dir ]
> + [ configure = configure ]
> + [ 7.1wheezy7 != ]
> + update_to_current_default profile
> + [ -f /etc/profile ]
> + md5sum /etc/profile
> + cut -f 1 -d
> + md5=91901ce5707909cfec8b3a1a6efbfa61
> + grep -q 91901ce5707909cfec8b3a1a6efbfa61 /usr/share/base-files/profile.md5sums
> + cmp -s /usr/share/base-files/profile /etc/profile
> + cp -p /usr/share/base-files/profile /etc/profile
> + echo Updating /etc/profile to current default.
> Updating /etc/profile to current default.
> + update_to_current_default nsswitch.conf
> + [ -f /etc/nsswitch.conf ]
> + md5sum /etc/nsswitch.conf
> + cut -f 1 -d
> + md5=295c15c4bdac80e50b37689ef08f359c
> + grep -q 295c15c4bdac80e50b37689ef08f359c /usr/share/base-files/nsswitch.conf.md5sums
> + cmp -s /usr/share/base-files/nsswitch.conf /etc/nsswitch.conf
> + cp -p /usr/share/base-files/nsswitch.conf /etc/nsswitch.conf
> + echo Updating /etc/nsswitch.conf to current default.
> Updating /etc/nsswitch.conf to current default.
> + dpkg --compare-versions 7.1wheezy7 lt-nl 7.7
> + install_directory mnt 755 root
> + [ ! -d /mnt ]
> + mkdir /mnt
> + chown root:root /mnt
> + chmod 755 /mnt
> + dpkg --compare-versions 7.1wheezy7 lt-nl 6.10
> (Reading database ... 11627 files and directories currently installed.)
> Preparing to replace libc6:amd64 2.13-38+deb7u6 (using .../libc6_2.19-13_amd64.deb) ...
> + set -e
> + export LC_ALL=C
> + type=upgrade
> + [ x2.19-13 != xin-favour ]
> + preversion=2.19-13
> + [ upgrade = upgrade ]
> + dpkg --compare-versions 2.19-13 lt 2.13-17
> + [ -n 2.19-13 ]
> + dpkg --compare-versions 2.19-13 lt 2.13-5
> + exit 0
> Checking for services that may need to be restarted...
> Checking init scripts...
> Unpacking replacement libc6:amd64 ...
> + set -e
> + [ upgrade = remove ]
> + [ upgrade = deconfigure ]
> + [ upgrade = purge ]
> + [ upgrade = remove ]
> + exit 0
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libc6:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libc6:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libc6:amd64.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libc6:amd64.prerm
> Setting up libc6:amd64 (2.19-13) ...
> + set -e
> + export LC_ALL=C
> + type=configure
> + preversion=2.13-38+deb7u6
> + [ configure = configure ]
> + rm -f /etc/ld.so.hwcappkgs
> + dpkg --print-architecture
> + all_upgraded=yes
> + [ -n ]
> + [ yes = yes ]
> + rm -f /etc/ld.so.nohwcap
> + [ -f /usr/share/debconf/confmodule ]
> + . /usr/share/debconf/confmodule
> + [ ! ]
> + PERL_DL_NONLAZY=1
> + export PERL_DL_NONLAZY
> + [ ]
> + exec /usr/share/debconf/frontend /var/lib/dpkg/info/libc6:amd64.postinst configure 2.13-38+deb7u6
> + set -e
> + export LC_ALL=C
> + type=configure
> + preversion=2.13-38+deb7u6
> + [ configure = configure ]
> + rm -f /etc/ld.so.hwcappkgs
> + dpkg --print-architecture
> + all_upgraded=yes
> + [ -n ]
> + [ yes = yes ]
> + rm -f /etc/ld.so.nohwcap
> + [ -f /usr/share/debconf/confmodule ]
> + . /usr/share/debconf/confmodule
> + [ ! 1 ]
> + [ -z ]
> + exec
> + [ ]
> + exec
> + DEBCONF_REDIR=1
> + export DEBCONF_REDIR
> + [ -n 2.13-38+deb7u6 ]
> + [ ! -d /var/mail ]
> + dpkg --compare-versions 2.13-38+deb7u6 lt 2.19
> + check=apache2.2-common apache apache-ssl apache-perl autofs at
> + check=apache2.2-common apache apache-ssl apache-perl autofs at boa cucipop courier-authdaemon cron cups exim
> + check=apache2.2-common apache apache-ssl apache-perl autofs at boa cucipop courier-authdaemon cron cups exim exim4-base dovecot-common cucipop incron lprng lpr
> + check=apache2.2-common apache apache-ssl apache-perl autofs at boa cucipop courier-authdaemon cron cups exim exim4-base dovecot-common cucipop incron lprng lpr lpr-ppd mysql-server nis openbsd-inetd
> + check=apache2.2-common apache apache-ssl apache-perl autofs at boa cucipop courier-authdaemon cron cups exim exim4-base dovecot-common cucipop incron lprng lpr lpr-ppd mysql-server nis openbsd-inetd openldapd proftpd postfix postfix-tls rsync samba
> + check=apache2.2-common apache apache-ssl apache-perl autofs at boa cucipop courier-authdaemon cron cups exim exim4-base dovecot-common cucipop incron lprng lpr lpr-ppd mysql-server nis openbsd-inetd openldapd proftpd postfix postfix-tls rsync samba sasl2-bin slapd smail sendmail snmpd ssh
> + check=apache2.2-common apache apache-ssl apache-perl autofs at boa cucipop courier-authdaemon cron cups exim exim4-base dovecot-common cucipop incron lprng lpr lpr-ppd mysql-server nis openbsd-inetd openldapd proftpd postfix postfix-tls rsync samba sasl2-bin slapd smail sendmail snmpd ssh spamassassin vsftpd wu-ftpd wu-ftpd-academ wwwoffle
> + check=apache2.2-common apache apache-ssl apache-perl autofs at boa cucipop courier-authdaemon cron cups exim exim4-base dovecot-common cucipop incron lprng lpr lpr-ppd mysql-server nis openbsd-inetd openldapd proftpd postfix postfix-tls rsync samba sasl2-bin slapd smail sendmail snmpd ssh spamassassin vsftpd wu-ftpd wu-ftpd-academ wwwoffle webmin dropbear gdm
> + echo -n Checking for services that may need to be restarted...
> Checking for services that may need to be restarted...+ dpkg -s apache2.2-common apache apache-ssl apache-perl autofs at boa cucipop courier-authdaemon cron cups exim exim4-base dovecot-common cucipop incron lprng lpr lpr-ppd mysql-server nis openbsd-inetd openldapd proftpd postfix postfix-tls rsync samba sasl2-bin slapd smail sendmail snmpd ssh spamassassin vsftpd wu-ftpd wu-ftpd-academ wwwoffle webmin dropbear gdm
> + egrep ^Package:|^Status:
> + awk {if ($1 ~ /^Package:/) { package=$2 } else if ($0 ~ /^Status: .* installed$/) { print package }}
> + check=
> + echo
> + sed -es/\bapache2.2-common\b/apache2/g -es/\bat\b/atd/g -es/\bdovecot-common\b/dovecot/g -es/\bexim4-base\b/exim4/g -es/\blpr\b/lpd/g -es/\blpr-ppd\b/lpd-ppd/g -es/\bmysql-server\b/mysql/g -es/\bsasl2-bin\b/saslauthd/g
> + check=
> + echo
>
> + echo Checking init scripts...
> Checking init scripts...
> + runlevel
> + sed s/.*\ //
> + rl=unknown
> + [ -n ]
> + echo Nothing to restart.
> Nothing to restart.
> + TELINIT=yes
> + ischroot
> + TELINIT=no
> + [ no = yes ]
> + [ configure = configure ]
> + ldconfig
> + exit 0
> (Reading database ... 11630 files and directories currently installed.)
> Preparing to replace sensible-utils 0.0.7 (using .../sensible-utils_0.0.9_all.deb) ...
> Unpacking replacement sensible-utils ...
> + set -e
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/sensible-utils.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/sensible-utils.postrm
> Setting up sensible-utils (0.0.9) ...
> + set -e
> + which update-mime
> (Reading database ... 11632 files and directories currently installed.)
> Preparing to replace debianutils 4.3.2 (using .../debianutils_4.4+b1_amd64.deb) ...
> Unpacking replacement debianutils ...
> + set -e
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/debianutils.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/debianutils.postrm
> Setting up debianutils (4.4+b1) ...
> + test -z 4.3.2
> + which update-mime
> (Reading database ... 11653 files and directories currently installed.)
> Preparing to replace bash 4.2+dfsg-0.1+deb7u3 (using .../archives/bash_4.3-11_amd64.deb) ...
> + set -e
> + case "$1" in
> + update-alternatives --remove builtins.7.gz /usr/share/man/man7/bash-builtins.7.gz
> Unpacking replacement bash ...
> + set -e
> + which update-menus
> + [ -x ]
> + exit 0
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/bash.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/bash.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/bash.prerm
> Setting up bash (4.3-11) ...
> Installing new version of config file /etc/bash.bashrc ...
> Installing new version of config file /etc/skel/.bashrc ...
> + set -e
> + '[' '!' -e /bin/sh ']'
> + update-alternatives --install /usr/share/man/man7/builtins.7.gz builtins.7.gz /usr/share/man/man7/bash-builtins.7.gz 10
> update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode
> + '[' configure = configure ']'
> + dpkg --compare-versions 4.2+dfsg-0.1+deb7u3 le 3.2-3
> + '[' configure = configure ']'
> ++ which update-menus
> + '[' -x '' ']'
> + exit 0
> (Reading database ... 11661 files and directories currently installed.)
> Preparing to replace dash 0.5.7-3 (using .../dash_0.5.7-4+b1_amd64.deb) ...
> + set -e
> + [ upgrade = remove ]
> + [ upgrade = deconfigure ]
> + [ upgrade = remove ]
> Unpacking replacement dash ...
> + set -e
> + test upgrade != upgrade
> + dpkg --compare-versions 0.5.7-4+b1 ge 0.5.2-3
> + test upgrade != remove
> + test upgrade = purge
> + exit 0
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/dash.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/dash.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/dash.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/dash.prerm
> Setting up dash (0.5.7-4+b1) ...
> + set -e
> + debconf=
> + [ -f /usr/share/debconf/confmodule ]
> + . /usr/share/debconf/confmodule
> + [ ! ]
> + PERL_DL_NONLAZY=1
> + export PERL_DL_NONLAZY
> + [ ]
> + exec /usr/share/debconf/frontend /var/lib/dpkg/info/dash.postinst configure 0.5.7-3
> + set -e
> + debconf=
> + [ -f /usr/share/debconf/confmodule ]
> + . /usr/share/debconf/confmodule
> + [ ! 1 ]
> + [ -z ]
> + exec
> + [ ]
> + exec
> + DEBCONF_REDIR=1
> + export DEBCONF_REDIR
> + debconf=yes
> + [ configure = configure ]
> + [ -z 0.5.7-3 ]
> + [ configure = configure ]
> + dpkg --compare-versions 0.5.7-3 lt 0.4.18
> + [ yes ]
> + db_get dash/sh
> + _db_cmd GET dash/sh
> + _db_internal_IFS=
>
> + IFS=
> + printf %s\n GET dash/sh
> + IFS=
>
> + IFS=
> read -r _db_internal_line
> + RET=true
> + return 0
> + check_divert true /bin/sh dash
> + dfile=/bin/sh
> + ltarget=dash
> + distrib=/bin/sh.distrib
> + dpkg-divert --listpackage /bin/sh
> + diverter=dash
> + dpkg-divert --truename /bin/sh
> + truename=/bin/sh.distrib
> + [ dash != dash ]
> + check_divert true /usr/share/man/man1/sh.1.gz dash.1.gz /usr/share/man/man1/sh.distrib.1.gz
> + dfile=/usr/share/man/man1/sh.1.gz
> + ltarget=dash.1.gz
> + distrib=/usr/share/man/man1/sh.distrib.1.gz
> + dpkg-divert --listpackage /usr/share/man/man1/sh.1.gz
> + diverter=dash
> + dpkg-divert --truename /usr/share/man/man1/sh.1.gz
> + truename=/usr/share/man/man1/sh.distrib.1.gz
> + [ dash != dash ]
> + test configure = configure
> + test -x /usr/bin/update-menus
> + exit 0
> (Reading database ... 11661 files and directories currently installed.)
> Preparing to replace diffutils 1:3.2-6 (using .../diffutils_1%3a3.3-1+b1_amd64.deb) ...
> Unpacking replacement diffutils ...
> Setting up diffutils (1:3.3-1+b1) ...
> (Reading database ... 11663 files and directories currently installed.)
> Preparing to replace e2fslibs:amd64 1.42.5-1.1 (using .../e2fslibs_1.42.12-1_amd64.deb) ...
> Unpacking replacement e2fslibs:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/e2fslibs:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/e2fslibs:amd64.postrm
> Setting up e2fslibs:amd64 (1.42.12-1) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11663 files and directories currently installed.)
> Preparing to replace e2fsprogs 1.42.5-1.1 (using .../e2fsprogs_1.42.12-1_amd64.deb) ...
> Unpacking replacement e2fsprogs ...
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/e2fsprogs.preinst
> Setting up e2fsprogs (1.42.12-1) ...
> (Reading database ... 11668 files and directories currently installed.)
> Preparing to replace findutils 4.4.2-4 (using .../findutils_4.4.2-9+b1_amd64.deb) ...
> Unpacking replacement findutils ...
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/findutils.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/findutils.preinst
> Setting up findutils (4.4.2-9+b1) ...
> + set -e
> + [ configure = configure ]
> + dpkg --compare-versions 4.4.2-4 le-nl 4.1.7-2
> + [ -d /var/cache/locate/ ]
> (Reading database ... 11669 files and directories currently installed.)
> Preparing to replace gzip 1.5-1.1 (using .../archives/gzip_1.6-4_amd64.deb) ...
> Unpacking replacement gzip ...
> Setting up gzip (1.6-4) ...
> (Reading database ... 11668 files and directories currently installed.)
> Preparing to replace hostname 3.11 (using .../hostname_3.15_amd64.deb) ...
> Unpacking replacement hostname ...
> Setting up hostname (3.15) ...
> (Reading database ... 11668 files and directories currently installed.)
> Preparing to replace libncursesw5:amd64 5.9-10 (using .../libncursesw5_5.9+20140913-1_amd64.deb) ...
> Unpacking replacement libncursesw5:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Preparing to replace libtinfo5:amd64 5.9-10 (using .../libtinfo5_5.9+20140913-1_amd64.deb) ...
> Unpacking replacement libtinfo5:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libncursesw5:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libtinfo5:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libncursesw5:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libtinfo5:amd64.postrm
> Setting up libtinfo5:amd64 (5.9+20140913-1) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11668 files and directories currently installed.)
> Preparing to replace libncurses5:amd64 5.9-10 (using .../libncurses5_5.9+20140913-1_amd64.deb) ...
> Unpacking replacement libncurses5:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libncurses5:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libncurses5:amd64.postrm
> Setting up libncurses5:amd64 (5.9+20140913-1) ...
> + set -e
> + PACKAGE=libncurses5
> + dpkg --compare-versions 5.9-10 lt-nl 5.9-7
> + [ configure = configure ]
> + ldconfig
> + exit 0
> (Reading database ... 11668 files and directories currently installed.)
> Preparing to replace ncurses-bin 5.9-10 (using .../ncurses-bin_5.9+20140913-1_amd64.deb) ...
> Unpacking replacement ncurses-bin ...
> Setting up ncurses-bin (5.9+20140913-1) ...
> (Reading database ... 11666 files and directories currently installed.)
> Preparing to replace perl-base 5.14.2-21+deb7u2 (using .../perl-base_5.20.1-2_amd64.deb) ...
> Unpacking replacement perl-base ...
> Setting up perl-base (5.20.1-2) ...
> (Reading database ... 11166 files and directories currently installed.)
> Preparing to replace liblocale-gettext-perl 1.05-7+b1 (using .../liblocale-gettext-perl_1.05-8+b1_amd64.deb) ...
> Unpacking replacement liblocale-gettext-perl ...
> Preparing to replace sed 4.2.1-10 (using .../sed_4.2.2-4+b1_amd64.deb) ...
> Unpacking replacement sed ...
> Setting up sed (4.2.2-4+b1) ...
> (Reading database ... 11169 files and directories currently installed.)
> Preparing to replace tar 1.26+dfsg-0.1 (using .../tar_1.27.1-2+b1_amd64.deb) ...
> + set -e
> Unpacking replacement tar ...
> + set -e
> + which update-mime
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/tar.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/tar.prerm
> Setting up tar (1.27.1-2+b1) ...
> + set -e
> + update-alternatives --install /usr/sbin/rmt rmt /usr/sbin/rmt-tar 50 --slave /usr/share/man/man8/rmt.8.gz rmt.8.gz /usr/share/man/man8/rmt-tar.8.gz
> (Reading database ... 11174 files and directories currently installed.)
> Preparing to replace ncurses-base 5.9-10 (using .../ncurses-base_5.9+20140913-1_all.deb) ...
> Unpacking replacement ncurses-base ...
> Setting up ncurses-base (5.9+20140913-1) ...
> (Reading database ... 11174 files and directories currently installed.)
> Preparing to replace libbz2-1.0:amd64 1.0.6-4 (using .../libbz2-1.0_1.0.6-7+b1_amd64.deb) ...
> Unpacking replacement libbz2-1.0:amd64 ...
> + set -eu
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libbz2-1.0:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libbz2-1.0:amd64.postrm
> Setting up libbz2-1.0:amd64 (1.0.6-7+b1) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11175 files and directories currently installed.)
> Preparing to replace readline-common 6.2+dfsg-0.1 (using .../readline-common_6.3-8_all.deb) ...
> Unpacking replacement readline-common ...
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/readline-common.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/readline-common.postrm
> Setting up readline-common (6.3-8) ...
> + [ configure = configure ]
> + [ 6.2+dfsg-0.1 = ]
> (Reading database ... 11176 files and directories currently installed.)
> Preparing to replace libreadline6:amd64 6.2+dfsg-0.1 (using .../libreadline6_6.3-8+b1_amd64.deb) ...
> Unpacking replacement libreadline6:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libreadline6:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libreadline6:amd64.postrm
> Setting up libreadline6:amd64 (6.3-8+b1) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11177 files and directories currently installed.)
> Preparing to replace libslang2:amd64 2.2.4-15 (using .../libslang2_2.3.0-2_amd64.deb) ...
> Unpacking replacement libslang2:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libslang2:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libslang2:amd64.postrm
> Setting up libslang2:amd64 (2.3.0-2) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11177 files and directories currently installed.)
> Preparing to replace libusb-0.1-4:amd64 2:0.1.12-20+nmu1 (using .../libusb-0.1-4_2%3a0.1.12-25_amd64.deb) ...
> Unpacking replacement libusb-0.1-4:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libusb-0.1-4:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libusb-0.1-4:amd64.postrm
> Setting up libusb-0.1-4:amd64 (2:0.1.12-25) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11178 files and directories currently installed.)
> Preparing to replace debconf 1.5.49 (using .../debconf_1.5.53_all.deb) ...
> + set -e
> + dpkg -L debconf
> + awk $0~/\.py$/ {print $0"c\n" $0"o"}
> + xargs rm -f
> + which pyclean
> + dpkg -L debconf
> + grep .py$
> + read file
> + rm -f /usr/share/pyshared/debconf.py[co]
> + read file
> + rm -f /usr/lib/python3/dist-packages/debconf.py[co]
> + read file
> + rm -f /usr/lib/python2.7/dist-packages/debconf.py[co]
> + read file
> + rm -f /usr/lib/python2.6/dist-packages/debconf.py[co]
> + read file
> + which py3clean
> + exit 0
> Unpacking replacement debconf ...
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/debconf.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/debconf.preinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/debconf.prerm
> Setting up debconf (1.5.53) ...
> + set -e
> + [ -z ]
> + [ configure = configure ]
> + [ -n 1.5.49 ]
> + dpkg --compare-versions 1.5.49 lt 1.1.0
> + . /usr/share/debconf/confmodule
> + [ ! ]
> + PERL_DL_NONLAZY=1
> + export PERL_DL_NONLAZY
> + [ ]
> + exec /usr/share/debconf/frontend /var/lib/dpkg/info/debconf.postinst configure 1.5.49
> + set -e
> + [ -z 1 ]
> + . /usr/share/debconf/confmodule
> + [ ! 1 ]
> + [ -z ]
> + exec
> + [ ]
> + exec
> + DEBCONF_REDIR=1
> + export DEBCONF_REDIR
> + [ configure = configure ]
> + [ -n 1.5.49 ]
> + dpkg --compare-versions 1.5.49 lt 1.3.11
> + which pycompile
> + which py3compile
> (Reading database ... 11175 files and directories currently installed.)
> Preparing to replace libattr1:amd64 1:2.4.46-8 (using .../libattr1_1%3a2.4.47-2_amd64.deb) ...
> Unpacking replacement libattr1:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libattr1:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libattr1:amd64.postrm
> Setting up libattr1:amd64 (1:2.4.47-2) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11175 files and directories currently installed.)
> Preparing to replace libacl1:amd64 2.2.51-8 (using .../libacl1_2.2.52-2_amd64.deb) ...
> Unpacking replacement libacl1:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libacl1:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libacl1:amd64.postrm
> Setting up libacl1:amd64 (2.2.52-2) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11175 files and directories currently installed.)
> Preparing to replace libuuid1:amd64 2.20.1-5.3 (using .../libuuid1_2.25.2-2_amd64.deb) ...
> Unpacking replacement libuuid1:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libuuid1:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libuuid1:amd64.postrm
> Setting up libuuid1:amd64 (2.25.2-2) ...
> + set -e
> + getent group libuuid
> + getent group uuidd
> + groupmod --new-name uuidd libuuid
> + getent passwd libuuid
> + getent passwd uuidd
> + invoke-rc.d --quiet uuidd stop
> + true
> + usermod --login uuidd --shell /bin/false --home /run/uuidd libuuid
> + [ -d /var/lib/libuuid ]
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11174 files and directories currently installed.)
> Preparing to replace libblkid1:amd64 2.20.1-5.3 (using .../libblkid1_2.25.2-2_amd64.deb) ...
> Unpacking replacement libblkid1:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libblkid1:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libblkid1:amd64.postrm
> Setting up libblkid1:amd64 (2.25.2-2) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11174 files and directories currently installed.)
> Preparing to replace libcomerr2:amd64 1.42.5-1.1 (using .../libcomerr2_1.42.12-1_amd64.deb) ...
> Unpacking replacement libcomerr2:amd64 ...
> + set -e
> + [ upgrade = remove ]
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libcomerr2:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libcomerr2:amd64.postrm
> Setting up libcomerr2:amd64 (1.42.12-1) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11174 files and directories currently installed.)
> Preparing to replace liblzma5:amd64 5.1.1alpha+20120614-2 (using .../liblzma5_5.1.1alpha+20120614-2+b1_amd64.deb) ...
> Unpacking replacement liblzma5:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/liblzma5:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/liblzma5:amd64.postrm
> Setting up liblzma5:amd64 (5.1.1alpha+20120614-2+b1) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11175 files and directories currently installed.)
> Preparing to replace libmount1 2.20.1-5.3 (using .../libmount1_2.25.2-2_amd64.deb) ...
> Unpacking replacement libmount1:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libmount1:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libmount1:amd64.postrm
> Setting up libmount1:amd64 (2.25.2-2) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11175 files and directories currently installed.)
> Preparing to replace libsepol1:amd64 2.1.4-3 (using .../libsepol1_2.3-2_amd64.deb) ...
> Unpacking replacement libsepol1:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libsepol1:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libsepol1:amd64.postrm
> Setting up libsepol1:amd64 (2.3-2) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11175 files and directories currently installed.)
> Preparing to replace libss2:amd64 1.42.5-1.1 (using .../libss2_1.42.12-1_amd64.deb) ...
> Unpacking replacement libss2:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libss2:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libss2:amd64.postrm
> Setting up libss2:amd64 (1.42.12-1) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11175 files and directories currently installed.)
> Preparing to replace zlib1g:amd64 1:1.2.7.dfsg-13 (using .../zlib1g_1%3a1.2.8.dfsg-2_amd64.deb) ...
> Unpacking replacement zlib1g:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/zlib1g:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/zlib1g:amd64.postrm
> Setting up zlib1g:amd64 (1:1.2.8.dfsg-2) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11175 files and directories currently installed.)
> Preparing to replace libapt-inst1.5:amd64 0.9.7.9+deb7u6 (using .../libapt-inst1.5_1.0.9.3_amd64.deb) ...
> Unpacking replacement libapt-inst1.5:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Preparing to replace tasksel-data 3.14.1 (using .../tasksel-data_3.29_all.deb) ...
> Unpacking replacement tasksel-data ...
> Preparing to replace tasksel 3.14.1 (using .../archives/tasksel_3.29_all.deb) ...
> Unpacking replacement tasksel ...
> + set -e
> + which update-menus
> + [ -x ]
> + [ upgrade = purge ]
> Preparing to replace libgc1c2 1:7.1-9.1 (using .../libgc1c2_1%3a7.2d-6.4_amd64.deb) ...
> Unpacking replacement libgc1c2:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Preparing to replace libnuma1 2.0.8~rc4-1 (using .../libnuma1_2.0.10-1_amd64.deb) ...
> Unpacking replacement libnuma1:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Preparing to replace gpgv 1.4.12-7+deb7u6 (using .../gpgv_1.4.18-4_amd64.deb) ...
> Unpacking replacement gpgv ...
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libapt-inst1.5:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libgc1c2:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libnuma1:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/tasksel-data.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/tasksel.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libapt-inst1.5:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libgc1c2:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libnuma1:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/tasksel.postrm
> Setting up gpgv (1.4.18-4) ...
> (Reading database ... 11178 files and directories currently installed.)
> Preparing to replace debian-archive-keyring 2014.1~deb7u1 (using .../debian-archive-keyring_2014.1_all.deb) ...
> Unpacking replacement debian-archive-keyring ...
> + set -e
> + [ upgrade = purge ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/debian-archive-keyring.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/debian-archive-keyring.postrm
> Setting up debian-archive-keyring (2014.1) ...
> + set -e
> + [ configure = configure -a -n 2014.1~deb7u1 ]
> + dpkg --compare-versions 2014.1~deb7u1 lt 2012.1
> (Reading database ... 11178 files and directories currently installed.)
> Preparing to replace gnupg 1.4.12-7+deb7u6 (using .../gnupg_1.4.18-4_amd64.deb) ...
> Unpacking replacement gnupg ...
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/gnupg.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/gnupg.preinst
> Setting up gnupg (1.4.18-4) ...
> + set -e
> + [ configure = configure ]
> + [ -e /etc/udev/rules.d/z60_gnupg.rules ]
> (Reading database ... 11177 files and directories currently installed.)
> Preparing to replace libpam-runtime 1.1.3-7.1 (using .../libpam-runtime_1.1.8-3.1_all.deb) ...
> + set -e
> + [ upgrade = remove ]
> Unpacking replacement libpam-runtime ...
> + [ upgrade = purge ]
> + [ upgrade = purge ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libpam-runtime.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libpam-runtime.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libpam-runtime.prerm
> Setting up libpam-runtime (1.1.8-3.1) ...
> + . /usr/share/debconf/confmodule
> + [ ! ]
> + PERL_DL_NONLAZY=1
> + export PERL_DL_NONLAZY
> + [ ]
> + exec /usr/share/debconf/frontend /var/lib/dpkg/info/libpam-runtime.postinst configure 1.1.3-7.1
> + . /usr/share/debconf/confmodule
> + [ ! 1 ]
> + [ -z ]
> + exec
> + [ ]
> + exec
> + DEBCONF_REDIR=1
> + export DEBCONF_REDIR
> + force=
> + [ -z 1.1.3-7.1 ]
> + dpkg --compare-versions 1.1.3-7.1 lt 1.0.1-11
> + pam-auth-update --package
> + [ -n ]
> + dpkg --compare-versions 1.1.3-7.1 lt-nl 1.1.0-1
> (Reading database ... 11227 files and directories currently installed.)
> Preparing to replace lsb-base 4.1+Debian8+deb7u1 (using .../lsb-base_4.1+Debian13+nmu1_all.deb) ...
> Unpacking replacement lsb-base ...
> Setting up lsb-base (4.1+Debian13+nmu1) ...
> (Reading database ... 11227 files and directories currently installed.)
> Preparing to replace multiarch-support 2.13-38+deb7u6 (using .../multiarch-support_2.19-13_amd64.deb) ...
> Unpacking replacement multiarch-support ...
> Setting up multiarch-support (2.19-13) ...
> (Reading database ... 11227 files and directories currently installed.)
> Preparing to replace tzdata 2014h-0wheezy1 (using .../tzdata_2014i-1_all.deb) ...
> Unpacking replacement tzdata ...
> + set -e
> + [ upgrade = purge ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/tzdata.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/tzdata.postrm
> Setting up tzdata (2014i-1) ...
> + set -e
> + LC_ALL=C
> + LANG=C
> + unset TZ
> + umask 022
> + . /usr/share/debconf/confmodule
> + [ ! ]
> + PERL_DL_NONLAZY=1
> + export PERL_DL_NONLAZY
> + [ ]
> + exec /usr/share/debconf/frontend /var/lib/dpkg/info/tzdata.postinst configure 2014h-0wheezy1
> + set -e
> + LC_ALL=C
> + LANG=C
> + unset TZ
> + umask 022
> + . /usr/share/debconf/confmodule
> + [ ! 1 ]
> + [ -z ]
> + exec
> + [ ]
> + exec
> + DEBCONF_REDIR=1
> + export DEBCONF_REDIR
> + db_version 2.0
> + _db_cmd VERSION 2.0
> + _db_internal_IFS=
>
> + IFS=
> + printf %s\n VERSION 2.0
> + IFS=
>
> + IFS=
> read -r _db_internal_line
> + RET=2.0
> + return 0
> + [ configure = configure ]
> + [ -e /etc/timezone ]
> + AREA=Etc
> + ZONE=UTC
> + db_get tzdata/Areas
> + _db_cmd GET tzdata/Areas
> + _db_internal_IFS=
>
> + IFS=
> + printf %s\n GET tzdata/Areas
> + IFS=
>
> + IFS=
> read -r _db_internal_line
> + RET=Etc
> + return 0
> + AREA=Etc
> + db_get tzdata/Zones/Etc
> + _db_cmd GET tzdata/Zones/Etc
> + _db_internal_IFS=
>
> + IFS=
> + printf %s\n GET tzdata/Zones/Etc
> + IFS=
>
> + IFS=
> read -r _db_internal_line
> + RET=UTC
> + return 0
> + ZONE=UTC
> + db_stop
> + echo STOP
> + echo Etc/UTC
> + cp -f /usr/share/zoneinfo/Etc/UTC /etc/localtime.dpkg-new
> + mv -f /etc/localtime.dpkg-new /etc/localtime
> + which restorecon
> + echo
>
> + echo Current default time zone: 'Etc/UTC'
> Current default time zone: 'Etc/UTC'
> + LC_ALL=C TZ=UTC0 date
> + TZBase=Thu Nov 13 10:49:15 UTC 2014
> + LC_ALL=C TZ=UTC0 date -d Thu Nov 13 10:49:15 UTC 2014
> + UTdate=Thu Nov 13 10:49:15 UTC 2014
> + unset TZ
> + LANG=C date -d Thu Nov 13 10:49:15 UTC 2014
> + TZdate=Thu Nov 13 10:49:15 UTC 2014
> + echo Local time is now: Thu Nov 13 10:49:15 UTC 2014.
> Local time is now: Thu Nov 13 10:49:15 UTC 2014.
> + echo Universal Time is now: Thu Nov 13 10:49:15 UTC 2014.
> Universal Time is now: Thu Nov 13 10:49:15 UTC 2014.
> + [ -z ]
> + echo Run 'dpkg-reconfigure tzdata' if you wish to change it.
> Run 'dpkg-reconfigure tzdata' if you wish to change it.
> + echo
>
> + exit 0
> (Reading database ... 11230 files and directories currently installed.)
> Preparing to replace dmidecode 2.11-9 (using .../dmidecode_2.12-3_amd64.deb) ...
> Unpacking replacement dmidecode ...
> Preparing to replace less 444-4 (using .../archives/less_458-3_amd64.deb) ...
> + set -e
> + exit 0
> Unpacking replacement less ...
> + set -e
> + which update-mime
> Preparing to replace libcr0 0.8.5-2 (using .../libcr0_0.8.5-2.1_amd64.deb) ...
> Unpacking replacement libcr0 ...
> + set -e
> + [ upgrade = remove ]
> Preparing to replace blcr-util 0.8.5-2 (using .../blcr-util_0.8.5-2.1_amd64.deb) ...
> Unpacking replacement blcr-util ...
> Preparing to replace debfoster 2.7-1.2 (using .../debfoster_2.7-2_amd64.deb) ...
> Unpacking replacement debfoster ...
> + [ upgrade = purge ]
> + exit 0
> Preparing to replace libblas3gf 1.2.20110419-5 (using .../libblas3gf_1.2.20110419-10_all.deb) ...
> + set -e
> + [ upgrade = upgrade ]
> + update-alternatives --display libblas.so.3gf
> + [ upgrade != upgrade ]
> + exit 0
> Unpacking replacement libblas3gf ...
> Preparing to replace libint1 1.1.4-1 (using .../libint1_1.1.5-1_amd64.deb) ...
> Unpacking replacement libint1 ...
> + set -e
> + [ upgrade = remove ]
> Preparing to replace liblapack3 3.4.1+dfsg-1+deb70u1 (using .../liblapack3_3.5.0-4_amd64.deb) ...
> + set -e
> + [ upgrade = upgrade ]
> + update-alternatives --display liblapack.so.3gf
> + [ upgrade != upgrade ]
> + exit 0
> Unpacking replacement liblapack3 ...
> + set -e
> + [ upgrade = purge ]
> Preparing to replace liblapack3gf 3.4.1+dfsg-1+deb70u1 (using .../liblapack3gf_3.5.0-4_all.deb) ...
> + set -e
> + . /usr/share/debconf/confmodule
> + [ ! ]
> + PERL_DL_NONLAZY=1
> + export PERL_DL_NONLAZY
> + [ ]
> + exec /usr/share/debconf/frontend /var/lib/dpkg/info/liblapack3gf.prerm upgrade 3.5.0-4
> + set -e
> + . /usr/share/debconf/confmodule
> + [ ! 1 ]
> + [ -z ]
> + exec
> + [ ]
> + exec
> + DEBCONF_REDIR=1
> + export DEBCONF_REDIR
> + [ upgrade = upgrade ]
> + update-alternatives --display liblapack.so.3gf
> + [ upgrade != upgrade ]
> + exit 0
> Unpacking replacement liblapack3gf ...
> Preparing to replace libtorque2 2.4.16+dfsg-1+deb7u3 (using .../libtorque2_2.4.16+dfsg-1.5_amd64.deb) ...
> Unpacking replacement libtorque2 ...
> + set -e
> + [ upgrade = remove ]
> Preparing to replace psi3 3.4.0-4 (using .../psi3_3.4.0-5_amd64.deb) ...
> Unpacking replacement psi3 ...
> Preparing to replace quantum-espresso-data 5.0-1 (using .../quantum-espresso-data_5.1+dfsg-3_all.deb) ...
> Unpacking replacement quantum-espresso-data ...
> Replacing files in old package quantum-espresso ...
> Preparing to replace libibverbs1 1.1.6-1 (using .../libibverbs1_1.1.8-1_amd64.deb) ...
> Unpacking replacement libibverbs1 ...
> + set -e
> + [ upgrade = remove ]
> Preparing to replace mpi-default-bin 1.0.1 (using .../mpi-default-bin_1.0.2+nmu2_amd64.deb) ...
> Unpacking replacement mpi-default-bin ...
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/less.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libcr0.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libibverbs1.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libint1.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/liblapack3.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libtorque2.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/debfoster.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libcr0.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libibverbs1.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libint1.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libtorque2.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/less.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/liblapack3.prerm
> Setting up libncursesw5:amd64 (5.9+20140913-1) ...
> + set -e
> + PACKAGE=libncursesw5
> + dpkg --compare-versions 5.9-10 lt-nl 5.9-7
> + [ configure = configure ]
> + ldconfig
> + exit 0
> Setting up liblocale-gettext-perl (1.05-8+b1) ...
> Setting up libapt-inst1.5:amd64 (1.0.9.3) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up libgc1c2:amd64 (1:7.2d-6.4) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up libnuma1:amd64 (2.0.10-1) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up dmidecode (2.12-3) ...
> Setting up less (458-3) ...
> + set -e
> + update-alternatives --quiet --install /usr/bin/pager pager /bin/less 77 --slave /usr/share/man/man1/pager.1.gz pager.1.gz /usr/share/man/man1/less.1.gz
> + update-alternatives --quiet --remove pager /usr/bin/less
> + [ -e /usr/share/debconf/confmodule ]
> + . /usr/share/debconf/confmodule
> + [ ! ]
> + PERL_DL_NONLAZY=1
> + export PERL_DL_NONLAZY
> + [ ]
> + exec /usr/share/debconf/frontend /var/lib/dpkg/info/less.postinst configure 444-4
> + set -e
> + update-alternatives --quiet --install /usr/bin/pager pager /bin/less 77 --slave /usr/share/man/man1/pager.1.gz pager.1.gz /usr/share/man/man1/less.1.gz
> + update-alternatives --quiet --remove pager /usr/bin/less
> + [ -e /usr/share/debconf/confmodule ]
> + . /usr/share/debconf/confmodule
> + [ ! 1 ]
> + [ -z ]
> + exec
> + [ ]
> + exec
> + DEBCONF_REDIR=1
> + export DEBCONF_REDIR
> + db_version 2.0
> + _db_cmd VERSION 2.0
> + _db_internal_IFS=
>
> + IFS=
> + printf %s\n VERSION 2.0
> + IFS=
>
> + IFS=
> read -r _db_internal_line
> + RET=2.0
> + return 0
> + db_purge
> + _db_cmd PURGE
> + _db_internal_IFS=
>
> + IFS=
> + printf %s\n PURGE
> + IFS=
>
> + IFS=
> read -r _db_internal_line
> + RET=0
> + return 0
> + exit 0
> Setting up libcr0 (0.8.5-2.1) ...
> + [ configure = configure ]
> + ldconfig
> + [ configure = configure ]
> + ldconfig
> Setting up blcr-util (0.8.5-2.1) ...
> Setting up debfoster (2.7-2) ...
> Setting up libblas3gf (1.2.20110419-10) ...
> Setting up libint1 (1.1.5-1) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up liblapack3 (3.5.0-4) ...
> + set -e
> + update-alternatives --install /usr/lib/liblapack.so.3 liblapack.so.3 /usr/lib/lapack/liblapack.so.3 10 --slave /usr/lib/liblapack.so.3gf liblapack.so.3gf /usr/lib/lapack/liblapack.so.3
> + exit 0
> Setting up liblapack3gf (3.5.0-4) ...
> Setting up libtorque2 (2.4.16+dfsg-1.5) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Setting up psi3 (3.4.0-5) ...
> Setting up quantum-espresso-data (5.1+dfsg-3) ...
> Setting up libibverbs1 (1.1.8-1) ...
> + set -e
> + [ configure = configure ]
> + getent group rdma
> + [ configure = configure ]
> + ldconfig
> Setting up mpi-default-bin (1.0.2+nmu2) ...
> Setting up tasksel-data (3.29) ...
> + set -e
> + dpkg --compare-versions 3.14.1 lt 3.14
> Setting up tasksel (3.29) ...
> + set -e
> + . /usr/share/debconf/confmodule
> + [ ! ]
> + PERL_DL_NONLAZY=1
> + export PERL_DL_NONLAZY
> + [ ]
> + exec /usr/share/debconf/frontend /var/lib/dpkg/info/tasksel.postinst configure 3.14.1
> + set -e
> + . /usr/share/debconf/confmodule
> + [ ! 1 ]
> + [ -z ]
> + exec
> + [ ]
> + exec
> + DEBCONF_REDIR=1
> + export DEBCONF_REDIR
> + [ configure = configure ]
> + which update-menus
> + [ -x ]
> ## Running apt-get -y dist-upgrade...
> Reading package lists...
> Building dependency tree...
> Reading state information...
> Starting
> Starting 2
> Investigating (0) libopenmpi1.6 [ amd64 ] < none -> 1.6.5-9 > ( libs )
> Broken libopenmpi1.6:amd64 Conflicts on libopenmpi1.3 [ amd64 ] < 1.4.5-1 > ( libs )
> Considering libopenmpi1.3:amd64 0 as a solution to libopenmpi1.6:amd64 17
> Added libopenmpi1.3:amd64 to the remove list
> Broken libopenmpi1.6:amd64 Conflicts on openmpi-libs0 [ amd64 ] < none > ( none )
> Considering libopenmpi1.3:amd64 0 as a solution to libopenmpi1.6:amd64 17
> Added libopenmpi1.3:amd64 to the remove list
> Fixing libopenmpi1.6:amd64 via remove of libopenmpi1.3:amd64
> Fixing libopenmpi1.6:amd64 via remove of libopenmpi1.3:amd64
> Investigating (0) libblacs-openmpi1 [ amd64 ] < none -> 1.1-33 > ( libs )
> Broken libblacs-openmpi1:amd64 Breaks on libblacs-mpi1 [ amd64 ] < 1.1-31 > ( libs ) (< 1.1-31.2)
> Considering libblacs-mpi1:amd64 -1 as a solution to libblacs-openmpi1:amd64 3
> Added libblacs-mpi1:amd64 to the remove list
> Fixing libblacs-openmpi1:amd64 via remove of libblacs-mpi1:amd64
> Investigating (0) libscalapack-openmpi1 [ amd64 ] < none -> 1.8.0-12 > ( libs )
> Broken libscalapack-openmpi1:amd64 Breaks on libscalapack-mpi1 [ amd64 ] < 1.8.0-9 > ( libs ) (< 1.8.0-9.1)
> Considering libscalapack-mpi1:amd64 -2 as a solution to libscalapack-openmpi1:amd64 2
> Added libscalapack-mpi1:amd64 to the remove list
> Fixing libscalapack-openmpi1:amd64 via remove of libscalapack-mpi1:amd64
> Done
> The following packages will be REMOVED:
> libblacs-mpi1 libopenmpi1.3 libscalapack-mpi1
> The following NEW packages will be installed:
> abinit-data aces3-data acl dbus dmsetup file gcc-4.9-base ifupdown init
> init-system-helpers iproute2 isc-dhcp-client isc-dhcp-common
> libalgorithm-c3-perl libarchive-extract-perl libatm1 libaudit-common
> libaudit1 libblacs-openmpi1 libblas-common libcap-ng0 libcap2 libcap2-bin
> libcgi-fast-perl libcgi-pm-perl libclass-c3-perl libclass-c3-xs-perl
> libcpan-meta-perl libcryptsetup4 libdata-optlist-perl libdata-section-perl
> libdb5.3 libdbus-1-3 libdebconfclient0 libdevmapper1.02.1 libdns-export100
> libelpa0 libexpat1 libfcgi-perl libffi6 libfftw3-double3 libfftw3-long3
> libfftw3-single3 libgcrypt20 libgdbm3 libgpg-error0 libhwloc-plugins
> libhwloc5 libirs-export91 libisc-export95 libisccfg-export90 libkmod2
> liblog-message-perl liblog-message-simple-perl libltdl7 libmagic1
> libmodule-build-perl libmodule-pluggable-perl libmodule-signature-perl
> libmro-compat-perl libopenmpi1.6 libpackage-constants-perl libpam-cap
> libpam-systemd libparams-util-perl libpciaccess0 libpcre3 libpod-latex-perl
> libpod-readme-perl libprocps3 libpython2.7 libpython2.7-minimal
> libpython2.7-stdlib libregexp-common-perl libscalapack-openmpi1
> libsmartcols1 libsoftware-license-perl libsqlite3-0 libssl1.0.0
> libsub-exporter-perl libsub-install-perl libsystemd0 libterm-ui-perl
> libtext-soundex-perl libtext-template-perl libudev1 libxc1 libxml2
> libxtables10 mime-support netbase ocl-icd-libopencl1 openmx-data perl
> perl-modules procps psmisc rename sgml-base startpar systemd systemd-sysv
> udev xml-core
> The following packages will be upgraded:
> abinit aces3 apt apt-utils base-passwd bsdutils coreutils cp2k cp2k-data
> dpkg grep initscripts libapt-pkg4.12 libblas3 libc-bin libfftw3-3 libgcc1
> libgfortran3 libgomp1 libpam-modules libpam-modules-bin libpam0g
> libquadmath0 libsc-data libsc7 libselinux1 libsemanage-common libsemanage1
> libstdc++6 login mount mpqc nvi nwchem nwchem-data openmpi-bin
> openmpi-checkpoint openmpi-common openmx passwd quantum-espresso sysv-rc
> sysvinit sysvinit-utils util-linux
> 45 upgraded, 104 newly installed, 3 to remove and 0 not upgraded.
> Need to get 242 MB of archives.
> After this operation, 709 MB of additional disk space will be used.
> Get:1 http://localhost/debian/ jessie/main cp2k amd64 2.5.1-3 [9402 kB]
> Get:2 http://localhost/debian/ jessie/main cp2k-data all 2.5.1-3 [17.6 MB]
> Get:3 http://localhost/debian/ jessie/main gcc-4.9-base amd64 4.9.1-19 [158 kB]
> Get:4 http://localhost/debian/ jessie/main libgcc1 amd64 1:4.9.1-19 [39.5 kB]
> Get:5 http://localhost/debian/ jessie/main libquadmath0 amd64 4.9.1-19 [129 kB]
> Get:6 http://localhost/debian/ jessie/main libgfortran3 amd64 4.9.1-19 [255 kB]
> Get:7 http://localhost/debian/ jessie/main libblas-common amd64 1.2.20110419-10 [8496 B]
> Get:8 http://localhost/debian/ jessie/main libblas3 amd64 1.2.20110419-10 [167 kB]
> Get:9 http://localhost/debian/ jessie/main libltdl7 amd64 2.4.2-1.11 [45.2 kB]
> Get:10 http://localhost/debian/ jessie/main libhwloc5 amd64 1.10.0-3 [86.9 kB]
> Get:11 http://localhost/debian/ jessie/main libstdc++6 amd64 4.9.1-19 [273 kB]
> Get:12 http://localhost/debian/ jessie/main libsc7 amd64 2.3.1-16 [2383 kB]
> Get:13 http://localhost/debian/ jessie/main mpqc amd64 2.3.1-16 [88.1 kB]
> Get:14 http://localhost/debian/ jessie/main libsc-data all 2.3.1-16 [121 kB]
> Get:15 http://localhost/debian/ jessie/main libelpa0 amd64 2013.11.008-2 [88.9 kB]
> Get:16 http://localhost/debian/ jessie/main libgomp1 amd64 4.9.1-19 [37.8 kB]
> Get:17 http://localhost/debian/ jessie/main libfftw3-3 amd64 3.3.4-1.1 [18.6 kB]
> Get:18 http://localhost/debian/ jessie/main libfftw3-long3 amd64 3.3.4-1.1 [312 kB]
> Get:19 http://localhost/debian/ jessie/main libfftw3-single3 amd64 3.3.4-1.1 [754 kB]
> Get:20 http://localhost/debian/ jessie/main libfftw3-double3 amd64 3.3.4-1.1 [722 kB]
> Get:21 http://localhost/debian/ jessie/main libscalapack-openmpi1 amd64 1.8.0-12 [2184 kB]
> Get:22 http://localhost/debian/ jessie/main quantum-espresso amd64 5.1+dfsg-3 [10.1 MB]
> Get:23 http://localhost/debian/ jessie/main nwchem amd64 6.5+r26243-2 [10.8 MB]
> Get:24 http://localhost/debian/ jessie/main nwchem-data all 6.5+r26243-2 [5839 kB]
> Get:25 http://localhost/debian/ jessie/main libpython2.7-minimal amd64 2.7.8-11 [374 kB]
> Get:26 http://localhost/debian/ jessie/main mime-support all 3.57 [35.8 kB]
> Get:27 http://localhost/debian/ jessie/main libdb5.3 amd64 5.3.28-6 [679 kB]
> Get:28 http://localhost/debian/ jessie/main libexpat1 amd64 2.1.0-6+b3 [80.3 kB]
> Get:29 http://localhost/debian/ jessie/main libffi6 amd64 3.1-2 [19.8 kB]
> Get:30 http://localhost/debian/ jessie/main libsqlite3-0 amd64 3.8.7.1-1 [438 kB]
> Get:31 http://localhost/debian/ jessie/main libssl1.0.0 amd64 1.0.1j-1 [1032 kB]
> Get:32 http://localhost/debian/ jessie/main libpython2.7-stdlib amd64 2.7.8-11 [1841 kB]
> Get:33 http://localhost/debian/ jessie/main libpython2.7 amd64 2.7.8-11 [1080 kB]
> Get:34 http://localhost/debian/ jessie/main openmpi-checkpoint amd64 1.6.5-9 [96.0 kB]
> Get:35 http://localhost/debian/ jessie/main openmpi-bin amd64 1.6.5-9 [154 kB]
> Get:36 http://localhost/debian/ jessie/main openmpi-common all 1.6.5-9 [111 kB]
> Get:37 http://localhost/debian/ jessie/main aces3-data all 3.0.8-1 [10.4 MB]
> Get:38 http://localhost/debian/ jessie/main aces3 amd64 3.0.8-1 [43.7 MB]
> Get:39 http://localhost/debian/ jessie/main libopenmpi1.6 amd64 1.6.5-9 [1468 kB]
> Get:40 http://localhost/debian/ jessie/main libblacs-openmpi1 amd64 1.1-33 [56.8 kB]
> Get:41 http://localhost/debian/ jessie/main libxc1 amd64 2.1.0-2 [283 kB]
> Get:42 http://localhost/debian/ jessie/main libgpg-error0 amd64 1.17-2 [81.7 kB]
> Get:43 http://localhost/debian/ jessie/main libgcrypt20 amd64 1.6.2-4 [389 kB]
> Get:44 http://localhost/debian/ jessie/main libsystemd0 amd64 215-5+b1 [82.3 kB]
> Get:45 http://localhost/debian/ jessie/main bsdutils amd64 1:2.25.2-2 [93.1 kB]
> Get:46 http://localhost/debian/ jessie/main libpcre3 amd64 1:8.35-3.1 [320 kB]
> Get:47 http://localhost/debian/ jessie/main libselinux1 amd64 2.3-2 [89.8 kB]
> Get:48 http://localhost/debian/ jessie/main coreutils amd64 8.23-3 [2721 kB]
> Get:49 http://localhost/debian/ jessie/main dpkg amd64 1.17.21 [2843 kB]
> Get:50 http://localhost/debian/ jessie/main grep amd64 2.20-4 [324 kB]
> Get:51 http://localhost/debian/ jessie/main libaudit-common all 1:2.4-1 [13.5 kB]
> Get:52 http://localhost/debian/ jessie/main libaudit1 amd64 1:2.4-1 [44.2 kB]
> Get:53 http://localhost/debian/ jessie/main libcap2 amd64 1:2.24-6 [15.1 kB]
> Get:54 http://localhost/debian/ jessie/main libudev1 amd64 215-5+b1 [49.4 kB]
> Get:55 http://localhost/debian/ jessie/main libgdbm3 amd64 1.8.3-13+b1 [30.1 kB]
> Get:56 http://localhost/debian/ jessie/main perl amd64 5.20.1-2 [2611 kB]
> Get:57 http://localhost/debian/ jessie/main perl-modules all 5.20.1-2 [2571 kB]
> Get:58 http://localhost/debian/ jessie/main init-system-helpers all 1.21 [13.9 kB]
> Get:59 http://localhost/debian/ jessie/main libsmartcols1 amd64 2.25.2-2 [109 kB]
> Get:60 http://localhost/debian/ jessie/main startpar amd64 0.59-3 [21.8 kB]
> Get:61 http://localhost/debian/ jessie/main sysvinit-utils amd64 2.88dsf-57 [84.5 kB]
> Get:62 http://localhost/debian/ jessie/main sysv-rc all 2.88dsf-57 [83.0 kB]
> Get:63 http://localhost/debian/ jessie/main mount amd64 2.25.2-2 [167 kB]
> Get:64 http://localhost/debian/ jessie/main initscripts amd64 2.88dsf-57 [87.3 kB]
> Get:65 http://localhost/debian/ jessie/main util-linux amd64 2.25.2-2 [844 kB]
> Get:66 http://localhost/debian/ jessie/main libdevmapper1.02.1 amd64 2:1.02.90-2 [145 kB]
> Get:67 http://localhost/debian/ jessie/main dmsetup amd64 2:1.02.90-2 [68.8 kB]
> Get:68 http://localhost/debian/ jessie/main libcryptsetup4 amd64 2:1.6.6-3 [103 kB]
> Get:69 http://localhost/debian/ jessie/main libkmod2 amd64 18-3 [46.2 kB]
> Get:70 http://localhost/debian/ jessie/main libprocps3 amd64 2:3.3.9-8 [56.3 kB]
> Get:71 http://localhost/debian/ jessie/main procps amd64 2:3.3.9-8 [235 kB]
> Get:72 http://localhost/debian/ jessie/main udev amd64 215-5+b1 [875 kB]
> Get:73 http://localhost/debian/ jessie/main acl amd64 2.2.52-2 [58.4 kB]
> Get:74 http://localhost/debian/ jessie/main libcap2-bin amd64 1:2.24-6 [25.1 kB]
> Get:75 http://localhost/debian/ jessie/main libpam0g amd64 1.1.8-3.1 [126 kB]
> Get:76 http://localhost/debian/ jessie/main systemd amd64 215-5+b1 [2530 kB]
> Get:77 http://localhost/debian/ jessie/main systemd-sysv amd64 215-5+b1 [29.1 kB]
> Get:78 http://localhost/debian/ jessie/main init amd64 1.21 [4634 B]
> Get:79 http://localhost/debian/ jessie/main libpam-modules-bin amd64 1.1.8-3.1 [104 kB]
> Get:80 http://localhost/debian/ jessie/main libpam-modules amd64 1.1.8-3.1 [305 kB]
> Get:81 http://localhost/debian/ jessie/main login amd64 1:4.2-2+b2 [718 kB]
> Get:82 http://localhost/debian/ jessie/main sysvinit amd64 2.88dsf-57 [99.9 kB]
> Get:83 http://localhost/debian/ jessie/main libapt-pkg4.12 amd64 1.0.9.3 [780 kB]
> Get:84 http://localhost/debian/ jessie/main apt amd64 1.0.9.3 [1100 kB]
> Get:85 http://localhost/debian/ jessie/main libdebconfclient0 amd64 0.192 [46.2 kB]
> Get:86 http://localhost/debian/ jessie/main base-passwd amd64 3.5.37 [64.5 kB]
> Get:87 http://localhost/debian/ jessie/main libc-bin amd64 2.19-13 [1282 kB]
> Get:88 http://localhost/debian/ jessie/main libsemanage-common all 2.3-1 [24.6 kB]
> Get:89 http://localhost/debian/ jessie/main libsemanage1 amd64 2.3-1 [88.2 kB]
> Get:90 http://localhost/debian/ jessie/main libmagic1 amd64 1:5.20-2 [243 kB]
> Get:91 http://localhost/debian/ jessie/main libxml2 amd64 2.9.1+dfsg1-4 [797 kB]
> Get:92 http://localhost/debian/ jessie/main libatm1 amd64 1:2.5.1-1.5 [73.3 kB]
> Get:93 http://localhost/debian/ jessie/main libcap-ng0 amd64 0.7.4-2 [13.2 kB]
> Get:94 http://localhost/debian/ jessie/main libdbus-1-3 amd64 1.8.8-2 [166 kB]
> Get:95 http://localhost/debian/ jessie/main libisc-export95 amd64 1:9.9.5.dfsg-5 [139 kB]
> Get:96 http://localhost/debian/ jessie/main libdns-export100 amd64 1:9.9.5.dfsg-5 [454 kB]
> Get:97 http://localhost/debian/ jessie/main libisccfg-export90 amd64 1:9.9.5.dfsg-5 [39.6 kB]
> Get:98 http://localhost/debian/ jessie/main libirs-export91 amd64 1:9.9.5.dfsg-5 [37.4 kB]
> Get:99 http://localhost/debian/ jessie/main dbus amd64 1.8.8-2 [285 kB]
> Get:100 http://localhost/debian/ jessie/main libpam-systemd amd64 215-5+b1 [118 kB]
> Get:101 http://localhost/debian/ jessie/main libpciaccess0 amd64 0.13.2-3 [47.1 kB]
> Get:102 http://localhost/debian/ jessie/main sgml-base all 1.26+nmu4 [14.6 kB]
> Get:103 http://localhost/debian/ jessie/main ocl-icd-libopencl1 amd64 2.2.3-1 [33.5 kB]
> Get:104 http://localhost/debian/ jessie/main passwd amd64 1:4.2-2+b2 [956 kB]
> Get:105 http://localhost/debian/ jessie/main apt-utils amd64 1.0.9.3 [367 kB]
> Get:106 http://localhost/debian/ jessie/main iproute2 amd64 3.16.0-2 [426 kB]
> Get:107 http://localhost/debian/ jessie/main ifupdown amd64 0.7.49 [66.5 kB]
> Get:108 http://localhost/debian/ jessie/main isc-dhcp-common amd64 4.3.1-5 [211 kB]
> Get:109 http://localhost/debian/ jessie/main isc-dhcp-client amd64 4.3.1-5 [249 kB]
> Get:110 http://localhost/debian/ jessie/main libxtables10 amd64 1.4.21-2+b1 [67.6 kB]
> Get:111 http://localhost/debian/ jessie/main netbase all 5.3 [19.0 kB]
> Get:112 http://localhost/debian/ jessie/main file amd64 1:5.20-2 [58.3 kB]
> Get:113 http://localhost/debian/ jessie/main abinit-data all 7.8.2-2 [11.9 MB]
> Get:114 http://localhost/debian/ jessie/main libalgorithm-c3-perl all 0.09-1 [11.9 kB]
> Get:115 http://localhost/debian/ jessie/main libarchive-extract-perl all 0.72-1 [24.8 kB]
> Get:116 http://localhost/debian/ jessie/main libcgi-pm-perl all 4.09-1 [213 kB]
> Get:117 http://localhost/debian/ jessie/main libfcgi-perl amd64 0.77-1+b1 [39.1 kB]
> Get:118 http://localhost/debian/ jessie/main libcgi-fast-perl all 1:2.04-1 [10.9 kB]
> Get:119 http://localhost/debian/ jessie/main libclass-c3-perl all 0.26-1 [22.9 kB]
> Get:120 http://localhost/debian/ jessie/main libclass-c3-xs-perl amd64 0.13-2+b1 [15.2 kB]
> Get:121 http://localhost/debian/ jessie/main libcpan-meta-perl all 2.142690-1 [125 kB]
> Get:122 http://localhost/debian/ jessie/main libparams-util-perl amd64 1.07-2+b1 [23.5 kB]
> Get:123 http://localhost/debian/ jessie/main libsub-install-perl all 0.928-1 [11.4 kB]
> Get:124 http://localhost/debian/ jessie/main libdata-optlist-perl all 0.109-1 [10.6 kB]
> Get:125 http://localhost/debian/ jessie/main libmro-compat-perl all 0.12-1 [13.2 kB]
> Get:126 http://localhost/debian/ jessie/main libsub-exporter-perl all 0.986-1 [49.9 kB]
> Get:127 http://localhost/debian/ jessie/main libdata-section-perl all 0.200006-1 [13.4 kB]
> Get:128 http://localhost/debian/ jessie/main liblog-message-perl all 0.8-1 [26.0 kB]
> Get:129 http://localhost/debian/ jessie/main liblog-message-simple-perl all 0.10-2 [8126 B]
> Get:130 http://localhost/debian/ jessie/main libmodule-build-perl all 0.421000-2 [265 kB]
> Get:131 http://localhost/debian/ jessie/main libmodule-pluggable-perl all 5.1-1 [25.0 kB]
> Get:132 http://localhost/debian/ jessie/main libmodule-signature-perl all 0.73-1 [31.6 kB]
> Get:133 http://localhost/debian/ jessie/main libpackage-constants-perl all 0.04-1 [5820 B]
> Get:134 http://localhost/debian/ jessie/main libpam-cap amd64 1:2.24-6 [12.3 kB]
> Get:135 http://localhost/debian/ jessie/main libpod-latex-perl all 0.61-1 [34.7 kB]
> Get:136 http://localhost/debian/ jessie/main libregexp-common-perl all 2013031301-1 [173 kB]
> Get:137 http://localhost/debian/ jessie/main libpod-readme-perl all 0.11-1 [15.3 kB]
> Get:138 http://localhost/debian/ jessie/main libtext-template-perl all 1.46-1 [53.1 kB]
> Get:139 http://localhost/debian/ jessie/main libsoftware-license-perl all 0.103010-3 [119 kB]
> Get:140 http://localhost/debian/ jessie/main libterm-ui-perl all 0.42-1 [19.1 kB]
> Get:141 http://localhost/debian/ jessie/main libtext-soundex-perl amd64 3.4-1+b2 [13.7 kB]
> Get:142 http://localhost/debian/ jessie/main nvi amd64 1.81.6-11+b1 [247 kB]
> Get:143 http://localhost/debian/ jessie/main psmisc amd64 22.21-2 [119 kB]
> Get:144 http://localhost/debian/ jessie/main rename all 0.20-3 [12.4 kB]
> Get:145 http://localhost/debian/ jessie/main xml-core all 0.13+nmu2 [24.2 kB]
> Get:146 http://localhost/debian/ jessie/main abinit amd64 7.8.2-2 [7328 kB]
> Get:147 http://localhost/debian/ jessie/main libhwloc-plugins amd64 1.10.0-3 [15.2 kB]
> Get:148 http://localhost/debian/ jessie/main openmx amd64 3.7.6-1 [909 kB]
> Get:149 http://localhost/debian/ jessie/main openmx-data all 3.7.6-1 [69.0 MB]
> Extracting templates from packages: 20%
Extracting templates from packages: 40%
Extracting templates from packages: 60%
Extracting templates from packages: 80%
Extracting templates from packages: 100%
> Preconfiguring packages ...
> Fetched 242 MB in 7s (30.5 MB/s)
> (Reading database ... 11268 files and directories currently installed.)
> Preparing to replace cp2k 2.2.426-8 (using .../cp2k_2.5.1-3_amd64.deb) ...
> Unpacking replacement cp2k ...
> Preparing to replace cp2k-data 2.2.426-8 (using .../cp2k-data_2.5.1-3_all.deb) ...
> Unpacking replacement cp2k-data ...
> Selecting previously unselected package gcc-4.9-base:amd64.
> Unpacking gcc-4.9-base:amd64 (from .../gcc-4.9-base_4.9.1-19_amd64.deb) ...
> Setting up gcc-4.9-base:amd64 (4.9.1-19) ...
> (Reading database ... 11757 files and directories currently installed.)
> Preparing to replace libgcc1:amd64 1:4.7.2-5 (using .../libgcc1_1%3a4.9.1-19_amd64.deb) ...
> Unpacking replacement libgcc1:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libgcc1:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libgcc1:amd64.postrm
> Setting up libgcc1:amd64 (1:4.9.1-19) ...
> + docdir=/usr/share/doc/libgcc1
> + [ -d /usr/share/doc/libgcc1 ]
> + [ ! -h /usr/share/doc/libgcc1 ]
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11757 files and directories currently installed.)
> Preparing to replace libquadmath0:amd64 4.7.2-5 (using .../libquadmath0_4.9.1-19_amd64.deb) ...
> Unpacking replacement libquadmath0:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Preparing to replace libgfortran3:amd64 4.7.2-5 (using .../libgfortran3_4.9.1-19_amd64.deb) ...
> Unpacking replacement libgfortran3:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Selecting previously unselected package libblas-common.
> Unpacking libblas-common (from .../libblas-common_1.2.20110419-10_amd64.deb) ...
> Preparing to replace libblas3 1.2.20110419-5 (using .../libblas3_1.2.20110419-10_amd64.deb) ...
> + set -e
> + [ upgrade = upgrade ]
> + update-alternatives --display libblas.so.3gf
> + [ upgrade != upgrade ]
> + exit 0
> Unpacking replacement libblas3 ...
> Selecting previously unselected package libltdl7:amd64.
> Unpacking libltdl7:amd64 (from .../libltdl7_2.4.2-1.11_amd64.deb) ...
> Selecting previously unselected package libhwloc5:amd64.
> Unpacking libhwloc5:amd64 (from .../libhwloc5_1.10.0-3_amd64.deb) ...
> Preparing to replace libstdc++6:amd64 4.7.2-5 (using .../libstdc++6_4.9.1-19_amd64.deb) ...
> Unpacking replacement libstdc++6:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libblas3.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libgfortran3:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libhwloc5:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libltdl7:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libquadmath0:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libstdc++6:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libgfortran3:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libhwloc5:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libltdl7:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libquadmath0:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libstdc++6:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libblas3.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libstdc++6:amd64.prerm
> Setting up libstdc++6:amd64 (4.9.1-19) ...
> + docdir=/usr/share/doc/libstdc++6
> + [ -d /usr/share/doc/libstdc++6 ]
> + [ ! -h /usr/share/doc/libstdc++6 ]
> + [ configure = configure ]
> + ldconfig
> (Reading database ... 11790 files and directories currently installed.)
> Preparing to replace libsc7 2.3.1-14 (using .../libsc7_2.3.1-16_amd64.deb) ...
> Unpacking replacement libsc7 ...
> + set -e
> + [ upgrade = remove ]
> Preparing to replace mpqc 2.3.1-14 (using .../mpqc_2.3.1-16_amd64.deb) ...
> Unpacking replacement mpqc ...
> Preparing to replace libsc-data 2.3.1-14 (using .../libsc-data_2.3.1-16_all.deb) ...
> Unpacking replacement libsc-data ...
> Selecting previously unselected package libelpa0.
> Unpacking libelpa0 (from .../libelpa0_2013.11.008-2_amd64.deb) ...
> Preparing to replace libgomp1:amd64 4.7.2-5 (using .../libgomp1_4.9.1-19_amd64.deb) ...
> Unpacking replacement libgomp1:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Preparing to replace libfftw3-3:amd64 3.3.2-3.1 (using .../libfftw3-3_3.3.4-1.1_amd64.deb) ...
> Unpacking replacement libfftw3-3:amd64 ...
> + set -e
> + [ upgrade = remove ]
> Selecting previously unselected package libfftw3-long3:amd64.
> Unpacking libfftw3-long3:amd64 (from .../libfftw3-long3_3.3.4-1.1_amd64.deb) ...
> Selecting previously unselected package libfftw3-single3:amd64.
> Unpacking libfftw3-single3:amd64 (from .../libfftw3-single3_3.3.4-1.1_amd64.deb) ...
> Selecting previously unselected package libfftw3-double3:amd64.
> Unpacking libfftw3-double3:amd64 (from .../libfftw3-double3_3.3.4-1.1_amd64.deb) ...
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libelpa0.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libfftw3-double3:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libfftw3-long3:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libfftw3-single3:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libgomp1:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libsc7.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libelpa0.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libfftw3-double3:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libfftw3-long3:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libfftw3-single3:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libgomp1:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libsc7.postrm
> (Reading database ... 11812 files and directories currently installed.)
> Removing libscalapack-mpi1 ...
> + set -e
> + [ remove = remove ]
> + ldconfig
> Selecting previously unselected package libscalapack-openmpi1.
> (Reading database ... 11806 files and directories currently installed.)
> Unpacking libscalapack-openmpi1 (from .../libscalapack-openmpi1_1.8.0-12_amd64.deb) ...
> Preparing to replace quantum-espresso 5.0-1 (using .../quantum-espresso_5.1+dfsg-3_amd64.deb) ...
> Unpacking replacement quantum-espresso ...
> Preparing to replace nwchem 6.1-6 (using .../nwchem_6.5+r26243-2_amd64.deb) ...
> Unpacking replacement nwchem ...
> Preparing to replace nwchem-data 6.1-6 (using .../nwchem-data_6.5+r26243-2_all.deb) ...
> Unpacking replacement nwchem-data ...
> Selecting previously unselected package libpython2.7-minimal:amd64.
> Unpacking libpython2.7-minimal:amd64 (from .../libpython2.7-minimal_2.7.8-11_amd64.deb) ...
> Selecting previously unselected package mime-support.
> Unpacking mime-support (from .../mime-support_3.57_all.deb) ...
> Selecting previously unselected package libdb5.3:amd64.
> Unpacking libdb5.3:amd64 (from .../libdb5.3_5.3.28-6_amd64.deb) ...
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libdb5.3:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libpython2.7-minimal:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libscalapack-openmpi1.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/mime-support.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libdb5.3:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libpython2.7-minimal:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libscalapack-openmpi1.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libpython2.7-minimal:amd64.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/mime-support.prerm
> Setting up libdb5.3:amd64 (5.3.28-6) ...
> + set -e
> + [ configure = configure ]
> + ldconfig
> Selecting previously unselected package libexpat1:amd64.
> (Reading database ... 12205 files and directories currently installed.)
> Unpacking libexpat1:amd64 (from .../libexpat1_2.1.0-6+b3_amd64.deb) ...
> Selecting previously unselected package libffi6:amd64.
> Unpacking libffi6:amd64 (from .../libffi6_3.1-2_amd64.deb) ...
> Selecting previously unselected package libsqlite3-0:amd64.
> Unpacking libsqlite3-0:amd64 (from .../libsqlite3-0_3.8.7.1-1_amd64.deb) ...
> Selecting previously unselected package libssl1.0.0:amd64.
> Unpacking libssl1.0.0:amd64 (from .../libssl1.0.0_1.0.1j-1_amd64.deb) ...
> Selecting previously unselected package libpython2.7-stdlib:amd64.
> Unpacking libpython2.7-stdlib:amd64 (from .../libpython2.7-stdlib_2.7.8-11_amd64.deb) ...
> Selecting previously unselected package libpython2.7:amd64.
> Unpacking libpython2.7:amd64 (from .../libpython2.7_2.7.8-11_amd64.deb) ...
> Preparing to replace openmpi-checkpoint 1.4.5-1 (using .../openmpi-checkpoint_1.6.5-9_amd64.deb) ...
> Unpacking replacement openmpi-checkpoint ...
> Preparing to replace openmpi-bin 1.4.5-1 (using .../openmpi-bin_1.6.5-9_amd64.deb) ...
> + set -e
> + [ upgrade != upgrade ]
> + exit 0
> Unpacking replacement openmpi-bin ...
> Preparing to replace openmpi-common 1.4.5-1 (using .../openmpi-common_1.6.5-9_all.deb) ...
> Unpacking replacement openmpi-common ...
> Selecting previously unselected package aces3-data.
> Unpacking aces3-data (from .../aces3-data_3.0.8-1_all.deb) ...
> dpkg: error processing /var/cache/apt/archives/aces3-data_3.0.8-1_all.deb (--unpack):
> trying to overwrite '/usr/share/aces3/GENBAS', which is also in package aces3 3.0.6-7
> dpkg-deb: error: subprocess paste was killed by signal (Broken pipe)
> Preparing to replace aces3 3.0.6-7 (using .../aces3_3.0.8-1_amd64.deb) ...
> Unpacking replacement aces3 ...
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libexpat1:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libffi6:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libpython2.7:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libsqlite3-0:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libssl1.0.0:amd64.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/openmpi-bin.postinst
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libexpat1:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libffi6:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libpython2.7:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libsqlite3-0:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libssl1.0.0:amd64.postrm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/libpython2.7-stdlib:amd64.prerm
> Dpkg hook: enabling sh trace for /var/lib/dpkg/info/openmpi-bin.prerm
> Errors were encountered while processing:
> /var/cache/apt/archives/aces3-data_3.0.8-1_all.deb
> E: Sub-process /usr/bin/dpkg returned an error code (1)
The full build log is available from:
http://aws-logs.debian.net/ftbfs-logs/2014/11/14/debichem-abinitio.log
It is reproducible by installing your package in a clean chroot, using
the debconf Noninteractive frontend, and priority: critical.
This looks like a bug in aces3 or aces3-data. However, both aces3 and
aces3-data can be upgraded safely (ie. the test for them succeed). It
also only occurs when testing debichem-abinitio. Hence the bug against
that package.
Lucas
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