[Debichem-devel] Bug#835279: tiledarray: FTBFS: ta_test.cpp:43:1: error: expected initializer at end of input BOOST_GLOBAL_FIXTURE( GlobalFixture )
Chris Lamb
lamby at debian.org
Wed Aug 24 07:52:13 UTC 2016
Source: tiledarray
Version: 0.4.4-1
Severity: serious
Justification: fails to build from source
User: reproducible-builds at lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-builds at lists.alioth.debian.org
Dear Maintainer,
tiledarray fails to build from source in unstable/amd64:
[..]
Unpacking liblapack-dev (3.6.1-2) ...
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Selecting previously unselected package libnl-route-3-200:amd64.
Preparing to unpack .../24-libnl-route-3-200_3.2.27-1_amd64.deb ...
Unpacking libnl-route-3-200:amd64 (3.2.27-1) ...
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Preparing to unpack .../25-libibverbs1_1.2.0-2_amd64.deb ...
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Unpacking libpciaccess0:amd64 (0.13.4-1) ...
Selecting previously unselected package ocl-icd-libopencl1:amd64.
Preparing to unpack .../27-ocl-icd-libopencl1_2.2.9-1_amd64.deb ...
Unpacking ocl-icd-libopencl1:amd64 (2.2.9-1) ...
Selecting previously unselected package libhwloc-plugins.
Preparing to unpack .../28-libhwloc-plugins_1.11.3-2_amd64.deb ...
Unpacking libhwloc-plugins (1.11.3-2) ...
Selecting previously unselected package libopenmpi1.10.
Preparing to unpack .../29-libopenmpi1.10_1.10.3-3_amd64.deb ...
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Unpacking libibverbs-dev (1.2.0-2) ...
Selecting previously unselected package libnuma-dev:amd64.
Preparing to unpack .../34-libnuma-dev_2.0.11-1_amd64.deb ...
Unpacking libnuma-dev:amd64 (2.0.11-1) ...
Selecting previously unselected package libltdl-dev:amd64.
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Unpacking libltdl-dev:amd64 (2.4.6-2) ...
Selecting previously unselected package libhwloc-dev:amd64.
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Unpacking libhwloc-dev:amd64 (1.11.3-2) ...
Selecting previously unselected package libopenmpi-dev.
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Preparing to unpack .../40-openssh-client_1%3a7.3p1-1_amd64.deb ...
Unpacking openssh-client (1:7.3p1-1) ...
Setting up libedit2:amd64 (3.1-20150325-1+b1) ...
Setting up libcurl3:amd64 (7.50.1-1) ...
Setting up libblas-common (3.6.1-2) ...
Setting up libnuma1:amd64 (2.0.11-1) ...
Setting up libgfortran3:amd64 (6.2.0-1) ...
Setting up libgfortran-6-dev:amd64 (6.2.0-1) ...
Setting up cmake-data (3.6.1-1) ...
Setting up libboost1.61-dev:amd64 (1.61.0+dfsg-2.1) ...
Setting up libmadness-dev (0.10-8) ...
Setting up pkg-config (0.29-4) ...
Setting up libblas3 (3.6.1-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up openmpi-common (1.10.3-3) ...
Processing triggers for libc-bin (2.23-5) ...
Setting up libltdl7:amd64 (2.4.6-2) ...
Setting up libpciaccess0:amd64 (0.13.4-1) ...
Processing triggers for man-db (2.7.5-1) ...
Setting up libboost-dev:amd64 (1.61.0.2) ...
Setting up libnuma-dev:amd64 (2.0.11-1) ...
Setting up ocl-icd-libopencl1:amd64 (2.2.9-1) ...
Setting up libnl-3-200:amd64 (3.2.27-1) ...
Setting up openssh-client (1:7.3p1-1) ...
Setting up liblzo2-2:amd64 (2.08-1.2) ...
Setting up libjsoncpp1:amd64 (1.7.4-3) ...
Setting up gfortran-6 (6.2.0-1) ...
Setting up libltdl-dev:amd64 (2.4.6-2) ...
Setting up libarchive13:amd64 (3.2.1-2) ...
Setting up libeigen3-dev (3.3~beta2-1) ...
Setting up liblapack3 (3.6.1-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up libnl-route-3-200:amd64 (3.2.27-1) ...
Setting up libhwloc5:amd64 (1.11.3-2) ...
Setting up libhwloc-plugins (1.11.3-2) ...
Setting up cmake (3.6.1-1) ...
Setting up gfortran (4:6.1.1-1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libibverbs1 (1.2.0-2) ...
Setting up libhwloc-dev:amd64 (1.11.3-2) ...
Setting up libblas-dev (3.6.1-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up libopenmpi1.10 (1.10.3-3) ...
Setting up libibverbs-dev (1.2.0-2) ...
Setting up liblapack-dev (3.6.1-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up libopenmpi-dev (1.10.3-3) ...
update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode
Setting up openmpi-bin (1.10.3-3) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
Setting up mpi-default-dev (1.7) ...
Setting up mpi-default-bin (1.7) ...
Setting up tiledarray-build-deps (0.4.4-1) ...
Processing triggers for libc-bin (2.23-5) ...
**************************************************************************************
** Environment **
**************************************************************************************
PATH=/home/lamby/git/projects/dotfiles/dotfiles/..//bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
HOSTNAME=b46948a9408d
TERM=xterm
PAGER=more
DISPLAY=:0
DOCKER_IMAGE=lamby-debian-sid
DEB_BUILD_OPTIONS=parallel=9
PIP_DOWNLOAD_CACHE=/home/lamby/.cache/pip
HOME=/home/lamby
LOGNAME=lamby
SHLVL=1
PWD=/home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4
OLDPWD=/home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray
GPG_TTY=/dev/console
QUILT_PATCHES=debian/patches
QUILT_NO_DIFF_INDEX=1
QUILT_REFRESH_ARGS=-p ab --no-timestamps --no-index
DEBEMAIL=lamby at debian.org
DEBFULLNAME=Chris Lamb
EDITOR=vim
LESS=-cgiFx4M
GPG_KEY=1E953E27D4311E58
BLASTER=A220 I5 D1 H5 P330 T6
_=/usr/bin/env
**************************************************************************************
** Building tiledarray 0.4.4-1 on amd64 **
**************************************************************************************
dpkg-buildpackage -rfakeroot -D -us -uc -b
dpkg-buildpackage: info: source package tiledarray
dpkg-buildpackage: info: source version 0.4.4-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Michael Banck <mbanck at debian.org>
dpkg-source --before-build tiledarray-0.4.4
dpkg-buildpackage: info: host architecture amd64
fakeroot debian/rules clean
dh clean --buildsystem=cmake
dh_testdir -O--buildsystem=cmake
dh_auto_clean -O--buildsystem=cmake
dh_clean -O--buildsystem=cmake
debian/rules build
dh build --buildsystem=cmake
dh_testdir -O--buildsystem=cmake
dh_update_autotools_config -O--buildsystem=cmake
debian/rules override_dh_auto_configure
make[1]: Entering directory '/home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4'
dh_auto_configure -- -DTA_BUILD_UNITTEST=ON
cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DTA_BUILD_UNITTEST=ON
-- The C compiler identification is GNU 6.2.0
-- The CXX compiler identification is GNU 6.2.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test TILEDARRAY_HAS_CXX11
-- Performing Test TILEDARRAY_HAS_CXX11 - Success
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of long double
-- Check size of long double - done
-- Check size of long long
-- Check size of long long - done
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Found MPI_C: /usr/lib/openmpi/lib/libmpi.so
-- Found MPI_CXX: /usr/lib/openmpi/lib/libmpi_cxx.so;/usr/lib/openmpi/lib/libmpi.so
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- A library with BLAS API found.
-- Looking for cheev_
-- Looking for cheev_ - found
-- A library with LAPACK API found.
-- Found Eigen: /usr/include/eigen3 (Required is at least version "3.0")
-- Performing Test EIGEN_COMPILES
-- Performing Test EIGEN_COMPILES - Success
-- Performing Test Madness_COMPILES
-- Performing Test Madness_COMPILES - Success
-- Boost version: 1.61.0
-- Performing Test BOOST_COMPILES
-- Performing Test BOOST_COMPILES - Success
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Configuring done
-- Generating done
-- Build files have been written to: /home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4/obj-x86_64-linux-gnu
make[1]: Leaving directory '/home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4'
debian/rules override_dh_auto_build
make[1]: Entering directory '/home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4'
dh_auto_build
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/usr/bin/cmake -E cmake_progress_start /home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4/obj-x86_64-linux-gnu/CMakeFiles 0
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(cd obj-*/tests; make ta_test)
make[2]: Entering directory '/home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4/obj-x86_64-linux-gnu/tests'
cd /home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4/obj-x86_64-linux-gnu && make -f CMakeFiles/Makefile2 tests/CMakeFiles/ta_test.dir/rule
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/usr/bin/cmake -E cmake_progress_start /home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4/obj-x86_64-linux-gnu/CMakeFiles 48
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cd /home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4 /home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4 /home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4/obj-x86_64-linux-gnu /home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4/obj-x86_64-linux-gnu /home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4/obj-x86_64-linux-gnu/CMakeFiles/External.dir/DependInfo.cmake --color=
Scanning dependencies of target External
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cd /home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4 /home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4/tests /home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4/obj-x86_64-linux-gnu /home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4/obj-x86_64-linux-gnu/tests /home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4/obj-x86_64-linux-gnu/tests/CMakeFiles/ta_test.dir/DependInfo.cmake --color=
Scanning dependencies of target ta_test
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[ 2%] Building CXX object tests/CMakeFiles/ta_test.dir/ta_test.cpp.o
cd /home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4/obj-x86_64-linux-gnu/tests && /usr/bin/c++ -DTILEDARRAY_NO_USER_ERROR_MESSAGES=1 -I/home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4/src -I/home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4/obj-x86_64-linux-gnu/src -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/include/eigen3 -I/home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4/tests -I/home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4/obj-x86_64-linux-gnu/tests -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DOMPI_SKIP_MPICXX=1 -DMPICH_SKIP_MPICXX=1 -Wdate-time -D_FORTIFY_SOURCE=2 -DMPICH_SKIP_MPICXX=1 -DOMPI_SKIP_MPICXX=1 -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wno-strict-aliasing -Wno-deprecated -Wno-unused-local-typedefs -o CMakeFiles/ta_test.dir/ta_test.cpp.o -c /home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4/tests/ta_test.cpp
In file included from /usr/include/boost/config.hpp:61:0,
from /usr/include/boost/detail/workaround.hpp:41,
from /usr/include/boost/test/utils/basic_cstring/basic_cstring_fwd.hpp:19,
from /usr/include/boost/test/utils/basic_cstring/basic_cstring.hpp:20,
from /usr/include/boost/test/detail/global_typedef.hpp:15,
from /usr/include/boost/test/output/compiler_log_formatter.hpp:19,
from /usr/include/boost/test/impl/compiler_log_formatter.ipp:19,
from /usr/include/boost/test/included/unit_test.hpp:15,
from /home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4/obj-x86_64-linux-gnu/tests/unit_test_config.h:30,
from /home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4/tests/ta_test.cpp:21:
/home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4/tests/ta_test.cpp:43:1: error: expected initializer at end of input
BOOST_GLOBAL_FIXTURE( GlobalFixture )
^
tests/CMakeFiles/ta_test.dir/build.make:65: recipe for target 'tests/CMakeFiles/ta_test.dir/ta_test.cpp.o' failed
make[5]: *** [tests/CMakeFiles/ta_test.dir/ta_test.cpp.o] Error 1
make[5]: Leaving directory '/home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4/obj-x86_64-linux-gnu'
CMakeFiles/Makefile2:964: recipe for target 'tests/CMakeFiles/ta_test.dir/all' failed
make[4]: *** [tests/CMakeFiles/ta_test.dir/all] Error 2
make[4]: Leaving directory '/home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4/obj-x86_64-linux-gnu'
CMakeFiles/Makefile2:971: recipe for target 'tests/CMakeFiles/ta_test.dir/rule' failed
make[3]: *** [tests/CMakeFiles/ta_test.dir/rule] Error 2
make[3]: Leaving directory '/home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4/obj-x86_64-linux-gnu'
Makefile:173: recipe for target 'tests/CMakeFiles/ta_test.dir/rule' failed
make[2]: *** [tests/CMakeFiles/ta_test.dir/rule] Error 2
make[2]: Leaving directory '/home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4/obj-x86_64-linux-gnu/tests'
debian/rules:28: recipe for target 'override_dh_auto_build' failed
make[1]: *** [override_dh_auto_build] Error 2
make[1]: Leaving directory '/home/lamby/temp/cdt.20160824084536.y40aJBnMd8.db.tiledarray/tiledarray-0.4.4'
debian/rules:22: recipe for target 'build' failed
make: *** [build] Error 2
[..]
The full build log is attached.
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` lamby at debian.org / chris-lamb.co.uk
`-
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