[Debichem-devel] Bug#810230: molds: FTBFS: /usr//lib//liblapacke.so: undefined reference to `cgejsv_'

[Chris Lamb]

Source: molds
Version: 0.3.1-1
Severity: serious
Justification: fails to build from source
User: reproducible-builds at lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-builds at lists.alioth.debian.org

Dear Maintainer,

molds fails to build from source in unstable/amd64:

  [..]

  mpicxx -I/usr/include/mpi -I/usr/lib/openblas-base//include/ -o obj/OptimizerFactory.o base/factories/OptimizerFactory.cpp -g -Wall -fopenmp -O2 -fopenmp -c
  mpicxx -I/usr/include/mpi -I/usr/lib/openblas-base//include/ -o obj/MolDS.o base/MolDS.cpp -g -Wall -fopenmp -O2 -fopenmp -c
  mpicxx -I/usr/include/mpi -I/usr/lib/openblas-base//include/ -o obj/Main.o Main.cpp -g -Wall -fopenmp -O2 -fopenmp -c
  mpicxx -o molds -Wl,-rpath=/usr//lib/ -Wl,-rpath=/usr/lib/openblas-base obj/Enums.o                      obj/PrintController.o    obj/MolDSException.o                                        obj/MallocerFreer.o                obj/MpiProcess.o   obj/AsyncCommunicator.o        obj/Blas.o        obj/Lapack.o    obj/Utilities.o    obj/MathUtilities.o    obj/EularAngle.o    obj/Parameters.o    obj/Atom.o                obj/Hatom.o          obj/Liatom.o          obj/Catom.o          obj/Natom.o          obj/Oatom.o          obj/Satom.o             obj/EnvironmentalPointCharge.o              obj/AtomFactory.o    obj/Molecule.o    obj/InputParser.o    obj/GTOExpansionSTO.o    obj/RealSphericalHarmonicsIndex.o            obj/MOLogger.o            obj/DensityLogger.o            obj/HoleDensityLogger.o            obj/ParticleDensityLogger.o                               obj/Cndo2.o                                       obj/Indo.o     obj/ZindoS.o    obj/Mndo.o   obj/Am1.o   obj/Am1D.o   obj/Pm3.o   obj/Pm3D.o   obj/Pm3Pddg.o              obj/ElectronicStructureFactory.o  obj/MD.o  obj/MC.o    obj/RPMD.o     obj/NASCO.o            obj/Optimizer.o            obj/ConjugateGradient.o            obj/SteepestDescent.o            obj/BFGS.o            obj/GEDIIS.o              obj/OptimizerFactory.o     obj/MolDS.o   obj/Main.o -L/usr//lib/ -L/usr/lib/openblas-base -lstdc++ -lm -lpthread -lgomp -L/usr/lib/lapack/ -llapacke -lmpi -lmpi_cxx -lboost_serialization -lboost_mpi -lboost_thread -lboost_system -lopenblas
  /usr//lib//liblapacke.so: undefined reference to `cgejsv_'
  /usr//lib//liblapacke.so: undefined reference to `zggsvd3_'
  /usr//lib//liblapacke.so: undefined reference to `cggsvd3_'
  /usr//lib//liblapacke.so: undefined reference to `sgghd3_'
  /usr//lib//liblapacke.so: undefined reference to `cggev3_'
  /usr//lib//liblapacke.so: undefined reference to `zgghd3_'
  /usr//lib//liblapacke.so: undefined reference to `cgges3_'
  /usr//lib//liblapacke.so: undefined reference to `cgetrf2_'
  /usr//lib//liblapacke.so: undefined reference to `zgesvj_'
  /usr//lib//liblapacke.so: undefined reference to `dgetrf2_'
  /usr//lib//liblapacke.so: undefined reference to `cggsvp3_'
  /usr//lib//liblapacke.so: undefined reference to `zggsvp3_'
  /usr//lib//liblapacke.so: undefined reference to `sggev3_'
  /usr//lib//liblapacke.so: undefined reference to `zggev3_'
  /usr//lib//liblapacke.so: undefined reference to `zgesvdx_'
  /usr//lib//liblapacke.so: undefined reference to `spotrf2_'
  /usr//lib//liblapacke.so: undefined reference to `sgges3_'
  /usr//lib//liblapacke.so: undefined reference to `sgetrf2_'
  /usr//lib//liblapacke.so: undefined reference to `cgesvdx_'
  /usr//lib//liblapacke.so: undefined reference to `zpotrf2_'
  /usr//lib//liblapacke.so: undefined reference to `dggsvd3_'
  /usr//lib//liblapacke.so: undefined reference to `dgghd3_'
  /usr//lib//liblapacke.so: undefined reference to `dggev3_'
  /usr//lib//liblapacke.so: undefined reference to `zgejsv_'
  /usr//lib//liblapacke.so: undefined reference to `sbdsvdx_'
  /usr//lib//liblapacke.so: undefined reference to `dpotrf2_'
  /usr//lib//liblapacke.so: undefined reference to `sggsvp3_'
  /usr//lib//liblapacke.so: undefined reference to `dgesvdx_'
  /usr//lib//liblapacke.so: undefined reference to `dgges3_'
  /usr//lib//liblapacke.so: undefined reference to `zgges3_'
  /usr//lib//liblapacke.so: undefined reference to `dbdsvdx_'
  /usr//lib//liblapacke.so: undefined reference to `zgetrf2_'
  /usr//lib//liblapacke.so: undefined reference to `cgesvj_'
  /usr//lib//liblapacke.so: undefined reference to `sgesvdx_'
  /usr//lib//liblapacke.so: undefined reference to `sggsvd3_'
  /usr//lib//liblapacke.so: undefined reference to `dggsvp3_'
  /usr//lib//liblapacke.so: undefined reference to `cpotrf2_'
  /usr//lib//liblapacke.so: undefined reference to `cgghd3_'
  collect2: error: ld returned 1 exit status
  Makefile_GNU:43: recipe for target 'molds' failed
  make[2]: *** [molds] Error 1
  make[2]: Leaving directory '/home/lamby/temp/cdt.20160107143305.87JDA1KenV/molds-0.3.1/src'
  debian/rules:31: recipe for target 'override_dh_auto_build' failed
  make[1]: *** [override_dh_auto_build] Error 2
  make[1]: Leaving directory '/home/lamby/temp/cdt.20160107143305.87JDA1KenV/molds-0.3.1'
  debian/rules:24: recipe for target 'build' failed
  make: *** [build] Error 2

  [..]

The full build log is attached.


Regards,

-- 
      ,''`.
     : :'  :     Chris Lamb
     `. `'`      lamby at debian.org / chris-lamb.co.uk
       `-
-------------- next part --------------
A non-text attachment was scrubbed...
Name: molds.0.3.1-1.unstable.amd64.log.txt.gz
Type: application/octet-stream
Size: 8447 bytes
Desc: not available
URL: <http://lists.alioth.debian.org/pipermail/debichem-devel/attachments/20160107/c197bdec/attachment.obj>