[Debichem-devel] Bug#810903: python-ase: FTBFS: VisibleDeprecationWarning: boolean index did not match indexed array along dimension 0; dimension is 20 but corresponding boolean dimension is 16

[Chris Lamb]

Source: python-ase
Version: 3.9.1.4567-2
Severity: serious
Justification: fails to build from source
User: reproducible-builds at lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-builds at lists.alioth.debian.org

Dear Maintainer,

python-ase fails to build from source in unstable/amd64:

  [..]

  COCu111.py (ScriptTestCase) ... Test suite failed
  ok
  
  ======================================================================
  ERROR: ga/basic_example_main_run.py (ScriptTestCase)
  ----------------------------------------------------------------------
  Traceback (most recent call last):
    File "/home/lamby/temp/cdt.20160113161620.G27Cs2P8mg/python-ase-3.9.1.4567/ase/test/__init__.py", line 51, in testfile
      {'display': self.display})
    File "/home/lamby/temp/cdt.20160113161620.G27Cs2P8mg/python-ase-3.9.1.4567/ase/test/ga/basic_example_main_run.py", line 49, in <module>
      dyn.run(fmax=0.05, steps=100)
    File "/home/lamby/temp/cdt.20160113161620.G27Cs2P8mg/python-ase-3.9.1.4567/ase/optimize/optimize.py", line 148, in run
      f = self.atoms.get_forces()
    File "/home/lamby/temp/cdt.20160113161620.G27Cs2P8mg/python-ase-3.9.1.4567/ase/atoms.py", line 691, in get_forces
      constraint.adjust_forces(self, forces)
    File "/home/lamby/temp/cdt.20160113161620.G27Cs2P8mg/python-ase-3.9.1.4567/ase/constraints.py", line 125, in adjust_forces
      forces[self.index] = 0.0
  VisibleDeprecationWarning: boolean index did not match indexed array along dimension 0; dimension is 20 but corresponding boolean dimension is 16
  
  ======================================================================
  ERROR: ga/mutations.py (ScriptTestCase)
  ----------------------------------------------------------------------
  Traceback (most recent call last):
    File "/home/lamby/temp/cdt.20160113161620.G27Cs2P8mg/python-ase-3.9.1.4567/ase/test/__init__.py", line 51, in testfile
      {'display': self.display})
    File "/home/lamby/temp/cdt.20160113161620.G27Cs2P8mg/python-ase-3.9.1.4567/ase/test/ga/mutations.py", line 60, in <module>
      c3, desc = mmut.get_new_individual([c1])
    File "/home/lamby/temp/cdt.20160113161620.G27Cs2P8mg/python-ase-3.9.1.4567/ase/ga/standardmutations.py", line 92, in get_new_individual
      indi = self.mutate(f)
    File "/home/lamby/temp/cdt.20160113161620.G27Cs2P8mg/python-ase-3.9.1.4567/ase/ga/standardmutations.py", line 120, in mutate
      a.set_positions(p_tot)
    File "/home/lamby/temp/cdt.20160113161620.G27Cs2P8mg/python-ase-3.9.1.4567/ase/atoms.py", line 608, in set_positions
      constraint.adjust_positions(self, newpositions)
    File "/home/lamby/temp/cdt.20160113161620.G27Cs2P8mg/python-ase-3.9.1.4567/ase/constraints.py", line 122, in adjust_positions
      new[self.index] = atoms.positions[self.index]
  VisibleDeprecationWarning: boolean index did not match indexed array along dimension 0; dimension is 36 but corresponding boolean dimension is 32
  
  ----------------------------------------------------------------------
  Ran 142 tests in 34.993s
  
  FAILED (errors=2)
  E: pybuild pybuild:274: test: plugin custom failed with: exit code=2: python2.7 /home/lamby/temp/cdt.20160113161620.G27Cs2P8mg/python-ase-3.9.1.4567/setup.py test
  dh_auto_test: pybuild --test -i python{version} -p 2.7 --dir . returned exit code 13
  debian/rules:11: recipe for target 'override_dh_auto_test' failed
  make[1]: *** [override_dh_auto_test] Error 25
  make[1]: Leaving directory '/home/lamby/temp/cdt.20160113161620.G27Cs2P8mg/python-ase-3.9.1.4567'
  debian/rules:8: recipe for target 'build' failed
  make: *** [build] Error 2

  [..]

The full build log is attached.


Regards,

-- 
      ,''`.
     : :'  :     Chris Lamb
     `. `'`      lamby at debian.org / chris-lamb.co.uk
       `-
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