[Debichem-devel] Bug#839361: mpqc3: FTBFS: Libint library is too old: a recent beta of 2.1.0 is required
Lucas Nussbaum
lucas at debian.org
Sat Oct 1 09:04:13 UTC 2016
Source: mpqc3
Version: 0.0~git20160216-3
Severity: serious
Tags: stretch sid
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20160930 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> dh_auto_configure -- -DMPI_C_COMPILER=mpicc
> cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DMPI_C_COMPILER=mpicc
> -- The CXX compiler identification is GNU 6.2.0
> -- The C compiler identification is GNU 6.2.0
> -- The Fortran compiler identification is GNU 6.2.0
> -- Check for working CXX compiler: /usr/bin/c++
> -- Check for working CXX compiler: /usr/bin/c++ -- works
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- Detecting CXX compile features
> -- Detecting CXX compile features - done
> -- Check for working C compiler: /usr/bin/cc
> -- Check for working C compiler: /usr/bin/cc -- works
> -- Detecting C compiler ABI info
> -- Detecting C compiler ABI info - done
> -- Detecting C compile features
> -- Detecting C compile features - done
> -- Check for working Fortran compiler: /usr/bin/gfortran
> -- Check for working Fortran compiler: /usr/bin/gfortran -- works
> -- Detecting Fortran compiler ABI info
> -- Detecting Fortran compiler ABI info - done
> -- Checking whether /usr/bin/gfortran supports Fortran 90
> -- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
> -- cotire 1.5.2 loaded.
> -- Performing Test HAVE_CXX_AUTO
> -- Performing Test HAVE_CXX_AUTO - Success
> -- Performing Test HAVE_STD_ARRAY
> -- Performing Test HAVE_STD_ARRAY - Success
> -- Performing Test HAVE_CXX_RESTRICT
> -- Performing Test HAVE_CXX_RESTRICT - Failed
> -- Performing Test HAVE_CXX___RESTRICT__
> -- Performing Test HAVE_CXX___RESTRICT__ - Success
> -- Looking for pthread.h
> -- Looking for pthread.h - found
> -- Looking for pthread_create
> -- Looking for pthread_create - not found
> -- Looking for pthread_create in pthreads
> -- Looking for pthread_create in pthreads - not found
> -- Looking for pthread_create in pthread
> -- Looking for pthread_create in pthread - found
> -- Found Threads: TRUE
> -- Looking for include file pthread.h
> -- Looking for include file pthread.h - found
> -- Looking for sys/types.h
> -- Looking for sys/types.h - found
> -- Looking for stdint.h
> -- Looking for stdint.h - found
> -- Looking for stddef.h
> -- Looking for stddef.h - found
> -- Check size of int64_t
> -- Check size of int64_t - done
> -- Check size of int32_t
> -- Check size of int32_t - done
> -- Check size of long
> -- Check size of long - done
> -- Check size of int
> -- Check size of int - done
> -- Looking for include file dlfcn.h
> -- Looking for include file dlfcn.h - found
> -- Looking for include file sys/time.h
> -- Looking for include file sys/time.h - found
> -- Looking for include file sys/times.h
> -- Looking for include file sys/times.h - found
> -- Looking for include file sys/resource.h
> -- Looking for include file sys/resource.h - found
> -- Looking for include file unistd.h
> -- Looking for include file unistd.h - found
> -- Looking for include file pwd.h
> -- Looking for include file pwd.h - found
> -- Looking for include file time.h
> -- Looking for include file time.h - found
> -- Looking for include file libunwind.h
> -- Looking for include file libunwind.h - not found
> -- Looking for C++ include cxxabi.h
> -- Looking for C++ include cxxabi.h - found
> -- Looking for include file execinfo.h
> -- Looking for include file execinfo.h - found
> -- Looking for gethostname
> -- Looking for gethostname - found
> -- Looking for getpwuid
> -- Looking for getpwuid - found
> -- Looking for geteuid
> -- Looking for geteuid - found
> -- Looking for getrusage
> -- Looking for getrusage - found
> -- Looking for lstat
> -- Looking for lstat - found
> -- Looking for time
> -- Looking for time - found
> -- Looking for ctime
> -- Looking for ctime - found
> -- Looking for posix_spawn
> -- Looking for posix_spawn - found
> -- Performing Test HAVE_CXA_DEMANGLE
> -- Performing Test HAVE_CXA_DEMANGLE - Success
> -- Looking for abi::__cxa_demangle - found
> -- Looking for backtrace
> -- Looking for backtrace - found
> -- Looking for backtrace_symbols
> -- Looking for backtrace_symbols - found
> -- Detecting Fortran/C Interface
> -- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling
> -- Verifying Fortran/CXX Compiler Compatibility
> -- Verifying Fortran/CXX Compiler Compatibility - Success
> -- Found PAPI: /usr/lib/x86_64-linux-gnu/libpapi.a
> -- Found MPI_C: /usr/lib/libmpi.so
> -- Found MPI_CXX: /usr/lib/libmpi_cxx.so;/usr/lib/libmpi.so
> -- Found MPI_Fortran: /usr/lib/libmpi_usempif08.so;/usr/lib/libmpi_usempi_ignore_tkr.so;/usr/lib/libmpi_mpifh.so;/usr/lib/libmpi.so
> -- MPI_LIBRARIES: /usr/lib/libmpi_cxx.so;/usr/lib/libmpi.so
> -- MPI_LINKER_FLAGS:
> -- Performing Test CXX_COMPILER_COMPILES_MPIIO
> -- Performing Test CXX_COMPILER_COMPILES_MPIIO - Success
> -- Looking for Fortran sgemm
> -- Looking for Fortran sgemm - found
> -- A library with BLAS API found.
> -- Looking for Fortran cheev
> -- Looking for Fortran cheev - found
> -- A library with LAPACK API found.
> -- BLAS libraries: /usr/lib/libblas.so
> -- LAPACK libraries: /usr/lib/liblapack.so;/usr/lib/libblas.so
> -- LAPACK linker flags:
> -- Found Eigen: /usr/include/eigen3 (Required is at least version "3.0")
> -- Performing Test EIGEN_COMPILES
> -- Performing Test EIGEN_COMPILES - Success
> -- Performing Test LIBINT_COMPILES
> -- Performing Test LIBINT_COMPILES - Success
> -- Performing Test LIBINT_IS_UP_TO_DATE
> -- Performing Test LIBINT_IS_UP_TO_DATE - Failed
> CMake Error at external/Libint:81 (message):
> Libint library is too old: a recent beta of 2.1.0 is required
> Call Stack (most recent call first):
> external/External:11 (include)
> CMakeLists.txt:301 (include)
>
>
> -- Configuring incomplete, errors occurred!
> See also "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/CMakeOutput.log".
> See also "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/CMakeError.log".
> "tail -v -n +0 CMakeCache.txt"
> ==> CMakeCache.txt <==
> # This is the CMakeCache file.
> # For build in directory: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
> # It was generated by CMake: /usr/bin/cmake
> # You can edit this file to change values found and used by cmake.
> # If you do not want to change any of the values, simply exit the editor.
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> ALWAYS_USE_MPI:BOOL=ON
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>
> //Path to a library.
> BLAS_acml_LIBRARY:FILEPATH=BLAS_acml_LIBRARY-NOTFOUND
>
> //Path to a library.
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>
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>
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> //Path to a library.
> BLAS_essl_LIBRARY:FILEPATH=BLAS_essl_LIBRARY-NOTFOUND
>
> //Path to a library.
> BLAS_f77blas_LIBRARY:FILEPATH=BLAS_f77blas_LIBRARY-NOTFOUND
>
> //Path to a library.
> BLAS_goto2_LIBRARY:FILEPATH=BLAS_goto2_LIBRARY-NOTFOUND
>
> //Path to a library.
> BLAS_openblas_LIBRARY:FILEPATH=BLAS_openblas_LIBRARY-NOTFOUND
>
> //Path to a library.
> BLAS_scsl_LIBRARY:FILEPATH=BLAS_scsl_LIBRARY-NOTFOUND
>
> //Path to a library.
> BLAS_sgemm_LIBRARY:FILEPATH=BLAS_sgemm_LIBRARY-NOTFOUND
>
> //Path to a library.
> BLAS_sunperf_LIBRARY:FILEPATH=BLAS_sunperf_LIBRARY-NOTFOUND
>
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> BLAS_vecLib_LIBRARY:FILEPATH=BLAS_vecLib_LIBRARY-NOTFOUND
>
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>
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> //object code libraries (lib/x86_64-linux-gnu)
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> //program executables (libexec)
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>
> //locale-dependent data (DATAROOTDIR/locale)
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>
> //No help, variable specified on the command line.
> CMAKE_INSTALL_LOCALSTATEDIR:UNINITIALIZED=/var
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> //man documentation (DATAROOTDIR/man)
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>
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>
> //system admin executables (sbin)
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>
> //modifiable architecture-independent data (com)
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>
> //No help, variable specified on the command line.
> CMAKE_INSTALL_SYSCONFDIR:UNINITIALIZED=/etc
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> //Path to a program.
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>
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>
> //MPI CXX libraries to link against
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>
> //MPI CXX linking flags
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>
> //Cleared
> MPI_C_COMPILER:FILEPATH=/usr/bin/mpicc
>
> //MPI C compilation flags
> MPI_C_COMPILE_FLAGS:STRING=
>
> //MPI C include path
> MPI_C_INCLUDE_PATH:STRING=/usr/lib/openmpi/include/openmpi;/usr/include;/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent;/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include;/usr/lib/openmpi/include
>
> //MPI C libraries to link against
> MPI_C_LIBRARIES:STRING=/usr/lib/libmpi.so
>
> //MPI C linking flags
> MPI_C_LINK_FLAGS:STRING= -Wl,-rpath -Wl,/usr//lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags
>
> //Extra MPI libraries to link against
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>
> //Path to a program.
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>
> //MPI Fortran compilation flags
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>
> //MPI Fortran include path
> MPI_Fortran_INCLUDE_PATH:STRING=/usr/lib/openmpi/include;/usr/lib/openmpi/lib
>
> //MPI Fortran libraries to link against
> MPI_Fortran_LIBRARIES:STRING=/usr/lib/libmpi_usempif08.so;/usr/lib/libmpi_usempi_ignore_tkr.so;/usr/lib/libmpi_mpifh.so;/usr/lib/libmpi.so
>
> //MPI Fortran linking flags
> MPI_Fortran_LINK_FLAGS:STRING= -Wl,-rpath -Wl,/usr//lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags
>
> //MPI library to link against
> MPI_LIBRARY:FILEPATH=/usr/lib/libmpi_cxx.so
>
> //Value Computed by CMake
> MPQC_BINARY_DIR:STATIC=/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
>
> //MPQC Expert mode: disables automatically downloading or building
> // dependencies
> MPQC_EXPERT:BOOL=OFF
>
> //Use new MPQC features (requires C++11)
> MPQC_NEW_FEATURES:BOOL=OFF
>
> //Use OpenMP
> MPQC_OPENMP:BOOL=OFF
>
> //Value Computed by CMake
> MPQC_SOURCE_DIR:STATIC=/<<PKGBUILDDIR>>
>
> //Path to a program.
> P4COMMAND:FILEPATH=P4COMMAND-NOTFOUND
>
> //Path to a file.
> PAPI_INCLUDE_DIRS:PATH=/usr/include
>
> //Path to a library.
> PAPI_LIBRARIES:FILEPATH=/usr/lib/x86_64-linux-gnu/libpapi.a
>
> //Path to a file.
> PAPI_PREFIX:PATH=/usr
>
> //Path to scp command, used by CTest for submitting results to
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> SVNCOMMAND-ADVANCED:INTERNAL=1
> //CMAKE_INSTALL_PREFIX during last run
> _GNUInstallDirs_LAST_CMAKE_INSTALL_PREFIX:INTERNAL=/usr
>
> dh_auto_configure: cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DMPI_C_COMPILER=mpicc returned exit code 1
> debian/rules:11: recipe for target 'override_dh_auto_configure' failed
> make[1]: *** [override_dh_auto_configure] Error 255
If the failure looks somehow time/timezone related:
Note that this rebuild was performed without the 'tzdata' package
installed in the chroot. tzdata used be (transitively) part of
build-essential, but it no longer is. If this package requires it to
build, it should be added to build-depends. For the release team's
opinion on this, see
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=836940#185
The full build log is available from:
http://aws-logs.debian.net/2016/09/30/mpqc3_0.0~git20160216-3_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
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