[Debichem-devel] Bug#875267: FTBFS: dpkg-source fails due to changes in upstream source

[Drew Parsons]

Package: nwchem
Version: 6.6+r27746-4
Severity: normal

nwchem cannot build on its own, since changes are made to some
upstream files outside of the debian/patches system.

This is caught during dh_clean in dh_auto_clean built on a pbuilder chroot
(pdebuild).

A build log reports:
  dh_auto_clean
  make[1]: Leaving directory '/home/drew/projects/scalapack-deps/build/nwchem'
     dh_autoreconf_clean
     dh_autotools-dev_restoreconfig
     dh_clean
  dpkg-source: info: using source format '3.0 (quilt)'
  dpkg-source: info: building nwchem using existing ./nwchem_6.6+r27746.orig.tar.bz2
  dpkg-source: warning: ignoring deletion of file src/nwpw/nwpwlib/D3dB/hilbert.c.bak, use --include-removal to override
  dpkg-source: warning: ignoring deletion of file src/nwpw/nwpwlib/utilities/paw_utilities/nwpw_gaunt.F.bak, use --include-removal to override
  dpkg-source: warning: ignoring deletion of file src/nwpw/libraryps/HGH_LDA/C.bak, use --include-removal to override
  dpkg-source: warning: ignoring deletion of file src/nwpw/libraryps/paw_default/Al.bak, use --include-removal to override
  dpkg-source: warning: ignoring deletion of file src/atomscf/src.orig, use --include-removal to override
  dpkg-source: warning: ignoring deletion of file src/tools/ga-5-4/gfutex/examples/scf/twoel.C.orig, use --include-removal to override
  dpkg-source: warning: ignoring deletion of file src/tools/ga-5-4/comex/src-dmapp/dmapp.h.bak, use --include-removal to override
  dpkg-source: warning: ignoring deletion of file web/doc/user.4.6/user.html.bak, use --include-removal to override
  dpkg-source: info: local changes detected, the modified files are:
   nwchem/src/config/NWCHEM_CONFIG
   nwchem/src/config/nwchem_config.h
  dpkg-source: error: aborting due to unexpected upstream changes, see /tmp/nwchem_6.6+r27746-4.1.diff.peJn2P
  dpkg-source: info: you can integrate the local changes with dpkg-source --commit

I tested after setting debian/compat to 10, so this new FTBFS may be a
consequence of debhelper 10.


-- System Information:
Debian Release: buster/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 4.12.0-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_AU.UTF-8, LC_CTYPE=en_AU.UTF-8 (charmap=UTF-8), LANGUAGE=en_AU.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

Versions of packages nwchem depends on:
ii  libatlas3-base [liblapack.so.3]    3.10.3-4
ii  libblas3 [libblas.so.3]            3.7.1-3
ii  libc6                              2.24-17
ii  libgcc1                            1:7.2.0-4
ii  libgfortran3                       6.4.0-5
ii  liblapack3 [liblapack.so.3]        3.7.1-3
ii  libopenblas-base [liblapack.so.3]  0.2.20+ds-3
ii  libopenmpi2                        2.1.1-6+b1
ii  libpython2.7                       2.7.13-4
ii  libquadmath0                       7.2.0-4
ii  mpi-default-bin                    1.9
ii  nwchem-data                        6.6+r27746-4
ii  zlib1g                             1:1.2.8.dfsg-5

nwchem recommends no packages.

nwchem suggests no packages.

-- no debconf information