[Debichem-devel] Bug#896194: gromacs FTBFS: GpuUtilsUnitTests (Timeout)

[Adrian Bunk]

Source: gromacs
Version: 2018.1-1
Severity: serious

https://buildd.debian.org/status/package.php?p=gromacs

...
      Start  9: GpuUtilsUnitTests

9: Test command: /<<PKGBUILDDIR>>/build/openmpi/bin/gpu_utils-test "--gtest_output=xml:/<<PKGBUILDDIR>>/build/openmpi/Testing/Temporary/GpuUtilsUnitTests.xml"
9: Test timeout computed to be: 30
9: [==========] Running 30 tests from 6 test cases.
9: [----------] Global test environment set-up.
9: [----------] 7 tests from HostAllocatorTest/0, where TypeParam = int
9: [ RUN      ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks
9: [       OK ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks (0 ms)
9: [ RUN      ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks
9: [       OK ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms)
9: [ RUN      ] HostAllocatorTest/0.TransfersWithoutPinningWork
9: [       OK ] HostAllocatorTest/0.TransfersWithoutPinningWork (0 ms)
9: [ RUN      ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve
9: [       OK ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve (0 ms)
9: [ RUN      ] HostAllocatorTest/0.ChangingPinningPolicyRequiresCuda
9: 
9: [WARNING] /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads.
 9/24 Test  #9: GpuUtilsUnitTests ................***Timeout  30.02 sec
[==========] Running 30 tests from 6 test cases.
[----------] Global test environment set-up.
[----------] 7 tests from HostAllocatorTest/0, where TypeParam = int
[ RUN      ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks
[       OK ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks (0 ms)
[ RUN      ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks
[       OK ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms)
[ RUN      ] HostAllocatorTest/0.TransfersWithoutPinningWork
[       OK ] HostAllocatorTest/0.TransfersWithoutPinningWork (0 ms)
[ RUN      ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve
[       OK ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve (0 ms)
[ RUN      ] HostAllocatorTest/0.ChangingPinningPolicyRequiresCuda

[WARNING] /<<PKGBUILDDIR>>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads.
...
The following tests FAILED:
	  9 - GpuUtilsUnitTests (Timeout)
Errors while running CTest
make: *** [debian/rules:172: build-openmpi] Error 8


This might be related to the recent updates
of openmpi and mpich in unstable.