[Debichem-devel] Bug#906463: ga: FTBFS in buster/sid (autobuilder hangs)

Santiago Vila sanvila at debian.org
Fri Aug 17 20:21:00 BST 2018

Package: src:ga
Version: 5.4~beta~r10636+dfsg-5.1
Severity: serious
Tags: ftbfs

Dear maintainer:

I tried to build this package in buster but it failed:

 debian/rules build-arch
dh build-arch 
   dh_update_autotools_config -a
   dh_autoreconf -a
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'.
libtoolize: copying file 'build-aux/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:75: installing 'build-aux/compile'
configure.ac:25: installing 'build-aux/missing'

[... snipped ...]

 All tests successful 
 All tests successful 
 Calling ga_terminate
[0] ARMCI Warning: Freed 1 leaked allocations
FAIL: global/testing/jacobi.x
                    1  error=   0.90874248454983464     
                   11  error=   0.55386217534558679     
                   21  error=   0.36486354153708295     
                   31  error=   0.24116268775625324     
                   41  error=   0.15946630424096853     
                   51  error=   0.10545582781906189     
                   61  error=    6.9740330953093038E-002
                   71  error=    4.6121211972660267E-002
                   81  error=    3.0501299286397710E-002
                   91  error=    2.0171408589793216E-002
                  101  error=    1.3339949504810773E-002
                  111  error=    8.8221038363347701E-003
                  121  error=    5.8343187198823176E-003
                  131  error=    3.8584078901802376E-003
                  141  error=    2.5516794979998729E-003
                  151  error=    1.6875012823194127E-003
                  161  error=    1.1159946146418185E-003
                  171  error=    7.3804031616847012E-004
                  181  error=    4.8808793622031840E-004
                  191  error=    3.2278701890030460E-004
                  201  error=    2.1346862284167976E-004
                  211  error=    1.4117312738651800E-004
                  221  error=    9.3361973440354843E-005
                  231  error=    6.1743040237476892E-005
                  241  error=    4.0832502541340957E-005
                  251  error=    2.7003744185130950E-005
                  261  error=    1.7858376406827068E-005
                  271  error=    1.1810273631028452E-005
  converged in                   276  iterations, error=    9.6043715704006143E-006
 All tests successful 
[0] ARMCI Warning: Freed 1 leaked allocations
FAIL: global/testing/mir_perf2.x
[0] ARMCI Error: 0:Program requires 4 GA processes:
MPI_ABORT was invoked on rank 0 in communicator MPI COMMUNICATOR 3 DUP FROM 0
with errorcode 1.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
E: Build killed with signal TERM after 60 minutes of inactivity

The build was made with "dpkg-buildpackage -B" in my autobuilder.
Most probably, it also fails here in reproducible builds:


where you can get a full build log if you need it.

If this is really a bug in one of the build-depends, please use reassign and affects,
so that this is still visible in the BTS web page for this package.


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