[Debichem-devel] Bug#975588: openms: FTBFS against boost_1.74

[Anton Gladky]

Package: openms
Version: 2.5.0+cleaned1-5
Severity: important
Tags: ftbfs
User: team+boost at tracker.debian.org
Usertags: boost174

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Dear maintainer,

it was discovered that your package failed to build
against boost_1.74. Logs can be found here [1]. Most relevant
part is probably this:

[  0%] Building CXX object src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/ALGO/Scoring.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/openswathalgo && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenSwathAlgo_EXPORTS -I/<<PKGBUILDDIR>>/src/openswathalgo/include -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/openswathalgo/include -I/<<PKGBUILDDIR>>/src/openswathalgo/thirdparty/MIToolbox/include -I/<<PKGBUILDDIR>>/src/openswathalgo/thirdparty/MIToolbox/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -o CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/ALGO/Scoring.cpp.o -c /<<PKGBUILDDIR>>/src/openswathalgo/source/OPENSWATHALGO/ALGO/Scoring.cpp
/<<PKGBUILDDIR>>/src/openswathalgo/source/OPENSWATHALGO/ALGO/Scoring.cpp: In function ‘std::vector<unsigned int> OpenSwath::Scoring::computeRank(const std::vector<double>&)’:
/<<PKGBUILDDIR>>/src/openswathalgo/source/OPENSWATHALGO/ALGO/Scoring.cpp:268:12: error: ‘sort’ is not a member of ‘std’; did you mean ‘sqrt’?
  268 |       std::sort(v_sort.begin(), v_sort.end());
      |            ^~~~
      

It is planned to push boost_1.74 as the default version in Debian/Bullseye.

[1] http://qa-logs.debian.net/2020/10/27-boost/boost/openms_2.5.0+cleaned1-5_unstable_boost.log

Best regards

Anton

- -- System Information:
Debian Release: bullseye/sid
  APT prefers testing
  APT policy: (500, 'testing')
Architecture: amd64 (x86_64)
Foreign Architectures: i386

Kernel: Linux 5.9.0-1-amd64 (SMP w/8 CPU threads)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

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