[Debichem-devel] Bug#982567: openms build-depends on removed package.

peter green plugwash at p10link.net
Thu Feb 11 22:54:54 GMT 2021


Package: openms
Version: 2.6.0+cleaned1-2
Severity: serious

openms build-depends on seqan-dev which was built by the sequan source
package, which was removed from unstable and testing recently. The person
requesting the removal stated that "There are no other users of seqan 1.x
in Debian." but it seems this was not correct.

I tried removing the build-dependency as there did not appear to be
a corresponding runtime depedency, but that made configure fail.

I then tried with libseqan3-dev but that also made configure fail

I then tried with libseqan2-dev, in that case configure succeeded
but the build failed with

> /openms-2.6.0+cleaned1/src/openms/source/FORMAT/FASTAFile.cpp:44:10: fatal error: seqan/seq_io/guess_stream_format.h: No such file or directory
>    44 | #include <seqan/seq_io/guess_stream_format.h>
>       |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> compilation terminated.



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