[Debichem-devel] Bug#1047002: libxc: Fails to build source after successful build
Lucas Nussbaum
lucas at debian.org
Sun Aug 13 20:20:56 BST 2023
Source: libxc
Version: 5.2.3-1
Severity: minor
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: debian-qa at lists.debian.org
Usertags: qa-doublebuild
Hi,
This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).
This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.
More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild
Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S
> -----------------------------------------------------------------------------------------------------------------
>
> dpkg-buildpackage: info: source package libxc
> dpkg-buildpackage: info: source version 5.2.3-1
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Michael Banck <mbanck at debian.org>
> dpkg-source --before-build .
> fakeroot debian/rules clean
> dh clean --parallel --with autoreconf --buildsystem autoconf
> dh: warning: Compatibility levels before 10 are deprecated (level 9 in use)
> debian/rules override_dh_auto_clean
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> dh_auto_clean
> dh_auto_clean: warning: Compatibility levels before 10 are deprecated (level 9 in use)
> make -j8 distclean
> make[2]: Entering directory '/<<PKGBUILDDIR>>'
> Making distclean in pkgconfig
> make[3]: Entering directory '/<<PKGBUILDDIR>>/pkgconfig'
> rm -rf .libs _libs
> rm -f *.lo
> test -z "libxc.pc libxcf90.pc libxcf03.pc" || rm -f libxc.pc libxcf90.pc libxcf03.pc
> test . = "." || test -z "" || rm -f
> test -z "libxc.pc libxcf90.pc libxcf03.pc" || rm -f libxc.pc libxcf90.pc libxcf03.pc
> rm -f Makefile
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/pkgconfig'
> Making distclean in scripts
> make[3]: Entering directory '/<<PKGBUILDDIR>>/scripts'
> rm -rf .libs _libs
> rm -f *.lo
> test -z "" || rm -f
> test . = "." || test -z "" || rm -f
> rm -f Makefile
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/scripts'
> Making distclean in maple
> make[3]: Entering directory '/<<PKGBUILDDIR>>/maple'
> Making distclean in lda_exc
> make[4]: Entering directory '/<<PKGBUILDDIR>>/maple/lda_exc'
> rm -rf .libs _libs
> rm -f *.lo
> test -z "" || rm -f
> test . = "." || test -z "" || rm -f
> rm -f Makefile
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/maple/lda_exc'
> Making distclean in lda_vxc
> make[4]: Entering directory '/<<PKGBUILDDIR>>/maple/lda_vxc'
> rm -rf .libs _libs
> rm -f *.lo
> test -z "" || rm -f
> test . = "." || test -z "" || rm -f
> rm -f Makefile
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/maple/lda_vxc'
> Making distclean in gga_exc
> make[4]: Entering directory '/<<PKGBUILDDIR>>/maple/gga_exc'
> rm -rf .libs _libs
> rm -f *.lo
> test -z "" || rm -f
> test . = "." || test -z "" || rm -f
> rm -f Makefile
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/maple/gga_exc'
> Making distclean in gga_vxc
> make[4]: Entering directory '/<<PKGBUILDDIR>>/maple/gga_vxc'
> rm -rf .libs _libs
> rm -f *.lo
> test -z "" || rm -f
> test . = "." || test -z "" || rm -f
> rm -f Makefile
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/maple/gga_vxc'
> Making distclean in mgga_exc
> make[4]: Entering directory '/<<PKGBUILDDIR>>/maple/mgga_exc'
> rm -rf .libs _libs
> rm -f *.lo
> test -z "" || rm -f
> rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
> test . = "." || test -z "" || rm -f
> rm -f Makefile
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/maple/mgga_exc'
> Making distclean in mgga_vxc
> make[4]: Entering directory '/<<PKGBUILDDIR>>/maple/mgga_vxc'
> rm -rf .libs _libs
> rm -f *.lo
> test -z "" || rm -f
> test . = "." || test -z "" || rm -f
> rm -f Makefile
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/maple/mgga_vxc'
> make[4]: Entering directory '/<<PKGBUILDDIR>>/maple'
> rm -rf .libs _libs
> rm -f *.lo
> test -z "" || rm -f
> rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
> test . = "." || test -z "" || rm -f
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/maple'
> rm -f Makefile
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/maple'
> Making distclean in src
> make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
> Making distclean in maple2c
> make[4]: Entering directory '/<<PKGBUILDDIR>>/src/maple2c'
> Making distclean in lda_exc
> make[5]: Entering directory '/<<PKGBUILDDIR>>/src/maple2c/lda_exc'
> rm -rf .libs _libs
> rm -f *.lo
> test -z "" || rm -f
> rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
> test . = "." || test -z "" || rm -f
> rm -f Makefile
> make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/maple2c/lda_exc'
> Making distclean in lda_vxc
> make[5]: Entering directory '/<<PKGBUILDDIR>>/src/maple2c/lda_vxc'
> rm -rf .libs _libs
> rm -f *.lo
> test -z "" || rm -f
> rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
> test . = "." || test -z "" || rm -f
> rm -f Makefile
> make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/maple2c/lda_vxc'
> Making distclean in gga_exc
> make[5]: Entering directory '/<<PKGBUILDDIR>>/src/maple2c/gga_exc'
> rm -rf .libs _libs
> rm -f *.lo
> test -z "" || rm -f
> rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
> test . = "." || test -z "" || rm -f
> rm -f Makefile
> make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/maple2c/gga_exc'
> Making distclean in gga_vxc
> make[5]: Entering directory '/<<PKGBUILDDIR>>/src/maple2c/gga_vxc'
> rm -rf .libs _libs
> rm -f *.lo
> test -z "" || rm -f
> rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
> test . = "." || test -z "" || rm -f
> rm -f Makefile
> make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/maple2c/gga_vxc'
> Making distclean in mgga_exc
> make[5]: Entering directory '/<<PKGBUILDDIR>>/src/maple2c/mgga_exc'
> rm -rf .libs _libs
> rm -f *.lo
> test -z "" || rm -f
> rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
> test . = "." || test -z "" || rm -f
> rm -f Makefile
> make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/maple2c/mgga_exc'
> Making distclean in mgga_vxc
> make[5]: Entering directory '/<<PKGBUILDDIR>>/src/maple2c/mgga_vxc'
> rm -rf .libs _libs
> rm -f *.lo
> test -z "" || rm -f
> rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
> test . = "." || test -z "" || rm -f
> rm -f Makefile
> make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/maple2c/mgga_vxc'
> make[5]: Entering directory '/<<PKGBUILDDIR>>/src/maple2c'
> rm -rf .libs _libs
> rm -f *.lo
> test -z "" || rm -f
> rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
> test . = "." || test -z "" || rm -f
> make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/maple2c'
> rm -f Makefile
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/maple2c'
> make[4]: Entering directory '/<<PKGBUILDDIR>>/src'
> test -z "*~ *.bak *.mod *.il *.d *.pc* ifc*" || rm -f *~ *.bak *.mod *.il *.d *.pc* ifc*
> test -z "libxc.la libxcf03.la libxcf90.la" || rm -f libxc.la libxcf03.la libxcf90.la
> rm -rf .libs _libs
> rm -f *.o
> rm -f *.lo
> rm -f xc-info xc-threshold
> rm -f *.tab.c
> test -z "" || rm -f
> rm -f genwiki xc-sanity
> test . = "." || test -z "" || rm -f
> rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
> rm -f ./so_locations
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/src'
> rm -f ./.deps/bessel.Plo
> rm -f ./.deps/deorbitalize_func.Plo
> rm -f ./.deps/expint_e1.Plo
> rm -f ./.deps/faddeeva.Plo
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> rm -f ./.deps/functionals.Plo
> rm -f ./.deps/genwiki.Po
> rm -f ./.deps/gga.Plo
> rm -f ./.deps/gga_c_acgga.Plo
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> rm -f ./.deps/gga_c_regtpss.Plo
> rm -f ./.deps/gga_c_revtca.Plo
> rm -f ./.deps/gga_c_scan_e0.Plo
> rm -f ./.deps/gga_c_sg4.Plo
> rm -f ./.deps/gga_c_sogga11.Plo
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> rm -f ./.deps/mgga_c_revscan.Plo
> rm -f ./.deps/mgga_c_revtpss.Plo
> rm -f ./.deps/mgga_c_rmggac.Plo
> rm -f ./.deps/mgga_c_rppscan.Plo
> rm -f ./.deps/mgga_c_rregtm.Plo
> rm -f ./.deps/mgga_c_rscan.Plo
> rm -f ./.deps/mgga_c_scan.Plo
> rm -f ./.deps/mgga_c_scanl.Plo
> rm -f ./.deps/mgga_c_tpss.Plo
> rm -f ./.deps/mgga_c_tpssloc.Plo
> rm -f ./.deps/mgga_c_vsxc.Plo
> rm -f ./.deps/mgga_k_csk.Plo
> rm -f ./.deps/mgga_k_csk_loc.Plo
> rm -f ./.deps/mgga_k_gea2.Plo
> rm -f ./.deps/mgga_k_gea4.Plo
> rm -f ./.deps/mgga_k_lk.Plo
> rm -f ./.deps/mgga_k_pc07.Plo
> rm -f ./.deps/mgga_k_pgslb.Plo
> rm -f ./.deps/mgga_k_rda.Plo
> rm -f ./.deps/mgga_x_2d_js17.Plo
> rm -f ./.deps/mgga_x_2d_prhg07.Plo
> rm -f ./.deps/mgga_x_2d_prp10.Plo
> rm -f ./.deps/mgga_x_br89.Plo
> rm -f ./.deps/mgga_x_br89_explicit.Plo
> rm -f ./.deps/mgga_x_edmgga.Plo
> rm -f ./.deps/mgga_x_ft98.Plo
> rm -f ./.deps/mgga_x_gdme.Plo
> rm -f ./.deps/mgga_x_gvt4.Plo
> rm -f ./.deps/mgga_x_gx.Plo
> rm -f ./.deps/mgga_x_jk.Plo
> rm -f ./.deps/mgga_x_lta.Plo
> rm -f ./.deps/mgga_x_m06l.Plo
> rm -f ./.deps/mgga_x_m08.Plo
> rm -f ./.deps/mgga_x_m11.Plo
> rm -f ./.deps/mgga_x_m11_l.Plo
> rm -f ./.deps/mgga_x_mbeef.Plo
> rm -f ./.deps/mgga_x_mbeefvdw.Plo
> rm -f ./.deps/mgga_x_mbr.Plo
> rm -f ./.deps/mgga_x_mbrxc_bg.Plo
> rm -f ./.deps/mgga_x_mbrxh_bg.Plo
> rm -f ./.deps/mgga_x_mcml.Plo
> rm -f ./.deps/mgga_x_mggac.Plo
> rm -f ./.deps/mgga_x_mn12.Plo
> rm -f ./.deps/mgga_x_ms.Plo
> rm -f ./.deps/mgga_x_msb.Plo
> rm -f ./.deps/mgga_x_mvs.Plo
> rm -f ./.deps/mgga_x_mvsb.Plo
> rm -f ./.deps/mgga_x_pbe_gx.Plo
> rm -f ./.deps/mgga_x_pkzb.Plo
> rm -f ./.deps/mgga_x_r2scan.Plo
> rm -f ./.deps/mgga_x_r2scanl.Plo
> rm -f ./.deps/mgga_x_r4scan.Plo
> rm -f ./.deps/mgga_x_regtm.Plo
> rm -f ./.deps/mgga_x_regtpss.Plo
> rm -f ./.deps/mgga_x_revtm.Plo
> rm -f ./.deps/mgga_x_rlda.Plo
> rm -f ./.deps/mgga_x_rppscan.Plo
> rm -f ./.deps/mgga_x_rscan.Plo
> rm -f ./.deps/mgga_x_rtpss.Plo
> rm -f ./.deps/mgga_x_sa_tpss.Plo
> rm -f ./.deps/mgga_x_scan.Plo
> rm -f ./.deps/mgga_x_scanl.Plo
> rm -f ./.deps/mgga_x_task.Plo
> rm -f ./.deps/mgga_x_tau_hcth.Plo
> rm -f ./.deps/mgga_x_tb09.Plo
> rm -f ./.deps/mgga_x_th.Plo
> rm -f ./.deps/mgga_x_tm.Plo
> rm -f ./.deps/mgga_x_tpss.Plo
> rm -f ./.deps/mgga_x_vt84.Plo
> rm -f ./.deps/mgga_xc_b97mv.Plo
> rm -f ./.deps/mgga_xc_b98.Plo
> rm -f ./.deps/mgga_xc_cc06.Plo
> rm -f ./.deps/mgga_xc_hle17.Plo
> rm -f ./.deps/mgga_xc_lp90.Plo
> rm -f ./.deps/mgga_xc_otpss_d.Plo
> rm -f ./.deps/mgga_xc_zlp.Plo
> rm -f ./.deps/mix_func.Plo
> rm -f ./.deps/references.Plo
> rm -f ./.deps/special_functions.Plo
> rm -f ./.deps/util.Plo
> rm -f ./.deps/version.Plo
> rm -f ./.deps/xc-info.Po
> rm -f ./.deps/xc-sanity.Po
> rm -f ./.deps/xc-threshold.Po
> rm -f Makefile
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
> Making distclean in testsuite
> make[3]: Entering directory '/<<PKGBUILDDIR>>/testsuite'
> Making distclean in pytest
> make[4]: Entering directory '/<<PKGBUILDDIR>>/testsuite/pytest'
> rm -rf .libs _libs
> rm -f *.lo
> test -z "" || rm -f
> test . = "." || test -z "" || rm -f
> rm -f Makefile
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/testsuite/pytest'
> make[4]: Entering directory '/<<PKGBUILDDIR>>/testsuite'
> test -z "*~ *.bak" || rm -f *~ *.bak
> rm -rf .libs _libs
> if test "x$tmpdir" == "x"; then tmpdir=/tmp; fi; \
> find $tmpdir -name 'libxc*' -type d -mmin +600 -exec rm -rf {} \; 2> /dev/null
> rm -f *.o
> test -z "xc-run_testsuite.log" || rm -f xc-run_testsuite.log
> rm -f *.lo
> rm -f *.tab.c
> test -z "" || rm -f
> rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
> rm -f xc-get_data xc-consistency xc-regression xc-error
> test -z "xc-run_testsuite.trs" || rm -f xc-run_testsuite.trs
> test . = "." || test -z "" || rm -f
> test -z "test-suite.log" || rm -f test-suite.log
> make[4]: [Makefile:1218: clean-local] Error 1 (ignored)
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/testsuite'
> rm -f ./.deps/xc_consistency-xc-consistency.Po
> rm -f ./.deps/xc_error-xc-error.Po
> rm -f ./.deps/xc_get_data-xc-get_data.Po
> rm -f ./.deps/xc_regression-xc-regression.Po
> rm -f Makefile
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/testsuite'
> Making distclean in cmake
> make[3]: Entering directory '/<<PKGBUILDDIR>>/cmake'
> rm -rf .libs _libs
> rm -f *.lo
> test -z "" || rm -f
> test . = "." || test -z "" || rm -f
> rm -f Makefile
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/cmake'
> Making distclean in pylibxc
> make[3]: Entering directory '/<<PKGBUILDDIR>>/pylibxc'
> rm -rf .libs _libs
> rm -f *.lo
> test -z "" || rm -f
> test . = "." || test -z "" || rm -f
> rm -f Makefile
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/pylibxc'
> make[3]: Entering directory '/<<PKGBUILDDIR>>'
> test -z "*~ *.bak" || rm -f *~ *.bak
> rm -rf .libs _libs
> rm -f *.lo
> test -z "xc_version.h" || rm -f xc_version.h
> rm -f config.h stamp-h1
> rm -f libtool config.lt
> rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
> test . = "." || test -z "" || rm -f
> rm -f cscope.out cscope.in.out cscope.po.out cscope.files
> make[3]: Leaving directory '/<<PKGBUILDDIR>>'
> rm -f config.status config.cache config.log configure.lineno config.status.lineno
> rm -f Makefile
> make[2]: Leaving directory '/<<PKGBUILDDIR>>'
> dh_auto_clean --buildsystem cmake
> dh_auto_clean: warning: Compatibility levels before 10 are deprecated (level 9 in use)
> rm -f testsuite/regression/lda_c/lda_c_pk09.*
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> dh_autoreconf_clean -O--parallel -O--buildsystem=autoconf
> dh_clean -O--parallel -O--buildsystem=autoconf
> dh_clean: warning: Compatibility levels before 10 are deprecated (level 9 in use)
> dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building libxc using existing ./libxc_5.2.3.orig.tar.gz
> dpkg-source: info: using patch list from debian/patches/series
> dpkg-source: warning: ignoring deletion of file INSTALL, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file testsuite/regression/lda_c/lda_c_pk09.BrOH+.unpol.0.bz2, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file testsuite/regression/lda_c/lda_c_pk09.Li.unpol.1.bz2, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file testsuite/regression/lda_c/lda_c_pk09.H.unpol.1.bz2, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file testsuite/regression/lda_c/lda_c_pk09.BrOH.unpol.1.bz2, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file testsuite/regression/lda_c/lda_c_pk09.Li.pol.0.bz2, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file testsuite/regression/lda_c/lda_c_pk09.Li.unpol.0.bz2, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file testsuite/regression/lda_c/lda_c_pk09.H.pol.0.bz2, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file testsuite/regression/lda_c/lda_c_pk09.Li.pol.1.bz2, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file testsuite/regression/lda_c/lda_c_pk09.H.pol.1.bz2, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file testsuite/regression/lda_c/lda_c_pk09.BrOH.pol.1.bz2, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file testsuite/regression/lda_c/lda_c_pk09.BrOH+.pol.1.bz2, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file testsuite/regression/lda_c/lda_c_pk09.BrOH.pol.0.bz2, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file testsuite/regression/lda_c/lda_c_pk09.H.unpol.0.bz2, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file testsuite/regression/lda_c/lda_c_pk09.BrOH.unpol.0.bz2, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file testsuite/regression/lda_c/lda_c_pk09.BrOH+.unpol.1.bz2, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file testsuite/regression/lda_c/lda_c_pk09.BrOH+.pol.0.bz2, use --include-removal to override
> dpkg-source: info: local changes detected, the modified files are:
> libxc-5.2.3/src/libxcf03.f90
> libxc-5.2.3/src/libxcf90.f90
> dpkg-source: error: aborting due to unexpected upstream changes, see /tmp/libxc_5.2.3-1.diff.bAiOLt
> dpkg-source: info: Hint: make sure the version in debian/changelog matches the unpacked source tree
> dpkg-source: info: you can integrate the local changes with dpkg-source --commit
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 2
>
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S' failed to run.
The full build log is available from:
http://qa-logs.debian.net/2023/08/13/libxc_5.2.3-1_unstable.log
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
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