[Debichem-devel] Bug#1056815: mdtraj: ftbfs with cython 3.0.x

[Sebastiaan Couwenberg]

Control: tags -1 patch

On Sun, 26 Nov 2023 10:05:39 +0000 Matthias Klose wrote:
> If the package cannot be built with cython 3.0.5, please change the
> build dependency from cython3 to cython3-legacy (available now in
> unstable).  There is no replacement for cython3-dbg.

The attached patch switches to cython3-legacy as the short term workaround.

Kind Regards,

Bas

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diff -Nru mdtraj-1.9.7/debian/changelog mdtraj-1.9.7/debian/changelog
--- mdtraj-1.9.7/debian/changelog	2023-03-01 11:54:43.000000000 +0100
+++ mdtraj-1.9.7/debian/changelog	2023-12-10 07:50:01.000000000 +0100
@@ -1,3 +1,10 @@
+mdtraj (1.9.7-6.1) UNRELEASED; urgency=medium
+
+  * Non-maintainer upload.
+  * Switch to cython3-legacy.
+
+ -- Bas Couwenberg <sebastic at debian.org>  Sun, 10 Dec 2023 07:50:01 +0100
+
 mdtraj (1.9.7-6) unstable; urgency=medium
 
   * update debian patch test_relax_tol.patch to relax tolerance in
diff -Nru mdtraj-1.9.7/debian/control mdtraj-1.9.7/debian/control
--- mdtraj-1.9.7/debian/control	2023-03-01 11:54:43.000000000 +0100
+++ mdtraj-1.9.7/debian/control	2023-12-10 07:50:01.000000000 +0100
@@ -5,7 +5,7 @@
 Uploaders: Drew Parsons <dparsons at debian.org>
 Build-Depends: debhelper-compat (= 13),
  dh-python,
- cython3 (>= 0.29~),
+ cython3-legacy (>= 0.29~),
  python3-setuptools,
  python3-all-dev,
  python3-numpy (>=1.6~),