[Debichem-devel] Bug#1028722: Bug#1028722: prody: FTBFS: AssertionError: 3205 != 3211 : selection 'abs(x) == sqrt(sq(x))' for Selection 'all' failed, expected 3211, selected 3205

[Lucas Nussbaum]

Hi,

On 27/01/23 at 14:31 +0200, Andrius Merkys wrote:
> Control: severity -1 important
> Control: tags -1 + moreinfo unreproducible
> 
> Hello,
> 
> On 2023-01-27 13:40, Adrian Bunk wrote:
> > On Sat, Jan 14, 2023 at 01:42:10PM +0100, Lucas Nussbaum wrote:
> > > Source: prody
> > > Version: 2.3.1+dfsg-3
> > > Severity: serious
> > > Justification: FTBFS
> > > Tags: bookworm sid ftbfs
> > > User: lucas at debian.org
> > > Usertags: ftbfs-20230113 ftbfs-bookworm
> > > 
> > > Hi,
> > > 
> > > During a rebuild of all packages in sid, your package failed to build
> > > on amd64.
> > > ...
> > > > ======================================================================
> > > > FAIL: testFunctionSelection13 (prody.tests.atomic.test_select.TestSelect)
> > > > Test function selections 'abs(x) == sqrt(sq(x))' for pdb3mht
> > > > ----------------------------------------------------------------------
> > > > Traceback (most recent call last):
> > > >    File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_prody/build/prody/tests/atomic/test_select.py", line 442, in func
> > > >      self.assertEqual(len(sel), natoms,
> > > > AssertionError: 3205 != 3211 : selection 'abs(x) == sqrt(sq(x))' for AtomGroup 3mht failed, expected 3211, selected 3205
> > > > 
> > > > ======================================================================
> > > > FAIL: testFunctionSelection14 (prody.tests.atomic.test_select.TestSelect)
> > > > Test function selections "abs(x) == sqrt(sq(x))"
> > > > ----------------------------------------------------------------------
> > > > Traceback (most recent call last):
> > > >    File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_prody/build/prody/tests/atomic/test_select.py", line 483, in func
> > > >      self.assertEqual(len(sel), natoms,
> > > > AssertionError: 3205 != 3211 : selection 'abs(x) == sqrt(sq(x))' for Selection 'all' failed, expected 3211, selected 3205
> > > > 
> > > > ----------------------------------------------------------------------
> > > > Ran 954 tests in 46.514s
> > > > 
> > > > FAILED (failures=2, skipped=37)
> > > ...
> > 
> > Are you still able to reproduce this?
> > 
> > It built both on the buildds and in reproducible:
> > https://buildd.debian.org/status/package.php?p=prody
> > https://tests.reproducible-builds.org/debian/history/prody.html
> 
> I cannot reproduce this neither in sid nor bookworm. Maybe this has
> something to do with temporary broken numpy.

It still fails for me

Lucas