[Debichem-devel] Bug#1037463: macromoleculebuilder: FTBFS with gemmi 0.6.2+ds-1

Andrius Merkys merkys at debian.org
Tue Jun 13 08:09:59 BST 2023


Source: macromoleculebuilder
Severity: serious
Version: 4.0.0+dfsg-2

Hello,

macromoleculebuilder FTBFS after recent update of gemmi to 0.6.2+ds-1:

/home/merkys/macromoleculebuilder-4.0.0+dfsg/src/CifOutput.cpp: In 
function 'void SimTK::CIFOut::reWriteOutCif(const gemmi::Model&, const 
std::string&, const std::string&, ParameterReader&, const 
SimTK::CompoundSystem&, bool)':
/home/merkys/macromoleculebuilder-4.0.0+dfsg/src/CifOutput.cpp:113:81: 
error: cannot bind rvalue reference of type 'gemmi::cif::Document&&' to 
lvalue of type 'gemmi::cif::Document'
   113 |         gemmi::Structure myTrajectoryOutputFile       = 
gemmi::make_structure ( doc );
       | 
                 ^~~

The issue is better fixed upstream, I will forward the report. In the 
meantime it is OK to remove macromoleculebuilder from testing to not 
obstruct the upcoming openmm transition.

Andrius



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