[Debichem-devel] Bug#1073410: pymol: FTBFS: grep: tcrm0900.log: No such file or directory

[Lucas Nussbaum]

Source: pymol
Version: 2.5.0+dfsg-1
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20240615 ftbfs-trixie

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.


Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> pdflatex -output-directory debian -jobname pymol-ref-card debian/pymolRef.tex
> This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex)
>  restricted \write18 enabled.
> entering extended mode
> (./debian/pymolRef.tex
> LaTeX2e <2023-11-01> patch level 1
> L3 programming layer <2024-03-14>
> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
> Document Class: article 2023/05/17 v1.4n Standard LaTeX document class
> (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))
> (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty)
> (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
> No file pymol-ref-card.aux.
> 
> Underfull \hbox (badness 10000) in paragraph at lines 78--79
> 
> [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2]
> (debian/pymol-ref-card.aux)
> kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tcrm0900
> mkdir: cannot create directory ‘././sbuild-nonexistent’: Permission denied
> mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tcrm0900
> This is METAFONT, Version 2.71828182 (TeX Live 2025/dev/Debian) (preloaded base=mf)
> 
> ! I can't write on file `tcrm0900.log'.
> Please type another transcript file name
> ! Emergency stop
> grep: tcrm0900.log: No such file or directory
> mktexpk: `mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tcrm0900' failed to make tcrm0900.600pk.
> kpathsea: Appending font creation commands to debian/missfont.log.
>  )
> (see the transcript file for additional information)
> !pdfTeX error: pdflatex (file tcrm0900): Font tcrm0900 at 600 not found
>  ==> Fatal error occurred, no output PDF file produced!
> make[1]: *** [debian/rules:44: debian/pymol-ref-card.pdf] Error 1


The full build log is available from:
http://qa-logs.debian.net/2024/06/15/pymol_2.5.0+dfsg-1_unstable.log

All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240615;users=lucas@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240615&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.