[Debichem-devel] Bug#1073455: Bug#1073455: openstructure: FTBFS: TypeError: unsupported operand type(s) for -: 'NoneType' and 'float'

[Adrian Bunk]

Control: retitle -1 openstructure FTBFS with scipy 1.12
Control: tags -1 patch

On Tue, Jun 25, 2024 at 05:29:20PM +0300, Andrius Merkys wrote:
> control: forwarded -1 openstructure-users at maillist.unibas.ch
> 
> On 2024-06-16 16:08, Lucas Nussbaum wrote:
> > ======================================================================
> > ERROR: testSpearmanCorrel (__main__.TestTable.testSpearmanCorrel)
> > ----------------------------------------------------------------------
> > Traceback (most recent call last):
> >    File "/<<PKGBUILDDIR>>/modules/base/tests/test_table.py", line 1668, in testSpearmanCorrel
> >      self.assertAlmostEqual(tab.SpearmanCorrel('second','third'), -0.316227766)
> >    File "/usr/lib/python3.11/unittest/case.py", line 904, in assertAlmostEqual
> >      diff = abs(first - second)
> >                 ~~~~~~^~~~~~~~
> > TypeError: unsupported operand type(s) for -: 'NoneType' and 'float'
> 
> This failure seems to have been caused by an API change in scipy. I have
> reported the issue upstream. A simple fix would be to skip this test
> entirely via a patch. In the meantime let us wait for upstream's response.

This has now been fixed upstream:
https://git.scicore.unibas.ch/schwede/openstructure/-/commit/15a499485ede152b6d432b7c91f1084e9e11bd8f

> Andrius

cu
Adrian