[Debichem-devel] Bug#1085793: prody: Python SyntaxWarning

[Graham Inggs]

Source: prody
Version: 2.4.1+dfsg-2
User: debian-python at lists.debian.org
Usertags: syntaxwarning

Hi Maintainer

The SyntaxWarning below were emitted when this package was tested with
pipuarts[1].

Regards
Graham


[1] https://piuparts.debian.org/sid/source/p/prody.html


  Setting up python3-prody (2.4.1+dfsg-2) ...
  /usr/lib/python3/dist-packages/prody/atomic/flags.py:463:
SyntaxWarning: invalid escape sequence '\ '
    __doc__ += """
  /usr/lib/python3/dist-packages/prody/atomic/select.py:2:
SyntaxWarning: invalid escape sequence '\|'
    """This module defines a class for selecting subsets of atoms.  You can read
  /usr/lib/python3/dist-packages/prody/atomic/select.py:719:
SyntaxWarning: invalid escape sequence '\w'
    RE_SCHARS = re_compile('`[\w\W]*?`')
  /usr/lib/python3/dist-packages/prody/atomic/select.py:738:
SyntaxWarning: invalid escape sequence '\w'
    RE_REGEXP = re_compile('"[\w\W]*"')
  /usr/lib/python3/dist-packages/prody/atomic/select.py:757:
SyntaxWarning: invalid escape sequence '\d'
    _ = '[-+]?\d+(\.\d*)?([eE]\d+)?'
  /usr/lib/python3/dist-packages/prody/atomic/select.py:758:
SyntaxWarning: invalid escape sequence '\ '
    RE_NRANGE = re_compile(_ + '\ *(to|:)\ *' + _)
  /usr/lib/python3/dist-packages/prody/atomic/select.py:761:
SyntaxWarning: invalid escape sequence '\ '
    pp.Optional(pp.Regex('(\ *:\ *' + _ + ')')))
  /usr/lib/python3/dist-packages/prody/dynamics/pca.py:59:
SyntaxWarning: invalid escape sequence '\_'
    """Build a covariance matrix for *coordsets* using mean coordinates
  /usr/lib/python3/dist-packages/prody/proteins/dssp.py:78:
SyntaxWarning: invalid escape sequence '\*'
    """Parse DSSP data from file *dssp* into :class:`.AtomGroup` instance
  /usr/lib/python3/dist-packages/prody/proteins/localpdb.py:438:
SyntaxWarning: invalid escape sequence '\.'
    pdbext = compile('\.(pdb|ent)(\.gz)?$', IGNORECASE)
  /usr/lib/python3/dist-packages/prody/proteins/localpdb.py:440:
SyntaxWarning: invalid escape sequence '\.'
    pdbext = compile('\.(pdb|ent)\.gz$', IGNORECASE)
  /usr/lib/python3/dist-packages/prody/proteins/localpdb.py:442:
SyntaxWarning: invalid escape sequence '\.'
    pdbext = compile('\.(pdb|ent)$', IGNORECASE)
  /usr/lib/python3/dist-packages/prody/sequence/analysis.py:169:
SyntaxWarning: invalid escape sequence '\{'
    """Apply one of the normalizations discussed in [MLC05]_ to *mutinfo*
  /usr/lib/python3/dist-packages/prody/utilities/doctools.py:48:
SyntaxWarning: invalid escape sequence '\i'
    """Returns wrapped lines from :func:`textwrap.wrap` after *join*\ing them.