[Debichem-devel] Bug#1082571: pymatgen: FTBFS: TypeError: 'SpglibDataset' object does not support item assignment
Santiago Vila
sanvila at debian.org
Sun Sep 22 12:55:04 BST 2024
Package: src:pymatgen
Version: 2024.6.10+dfsg1-8
Severity: serious
Tags: ftbfs
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules binary
dh binary --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
dh_auto_build -O--buildsystem=pybuild
I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module
I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pymatgen
* Building wheel...
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-cpython-312
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=================================== FAILURES ===================================
____________ TestQuasiHarmonicDebyeApprox.test_thermal_conductivity ____________
self = <tests.analysis.test_quasi_harmonic_debye_approx.TestQuasiHarmonicDebyeApprox testMethod=test_thermal_conductivity>
def test_thermal_conductivity(self):
kappa = self.qhda.thermal_conductivity(self.T, self.opt_vol)
> assert_allclose(kappa, 131.736242, atol=1e-1)
.pybuild/test_python3.12/tests/analysis/test_quasi_harmonic_debye_approx.py:129:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
args = (<function assert_allclose.<locals>.compare at 0x7f51f791afc0>, array(131.88900754), array(131.736242))
kwds = {'equal_nan': True, 'err_msg': '', 'header': 'Not equal to tolerance rtol=1e-07, atol=0.1', 'verbose': True}
@wraps(func)
def inner(*args, **kwds):
with self._recreate_cm():
> return func(*args, **kwds)
E AssertionError:
E Not equal to tolerance rtol=1e-07, atol=0.1
E
E Mismatched elements: 1 / 1 (100%)
E Max absolute difference: 0.15276554
E Max relative difference: 0.00115963
E x: array(131.889008)
E y: array(131.736242)
/usr/lib/python3.12/contextlib.py:81: AssertionError
----------------------------- Captured stderr call -----------------------------
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264: DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264: DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264: DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264: DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264: DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264: DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264: DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264: DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264: DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264: DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264: DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264: DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264: DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264: DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264: DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264: DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264: DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264: DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264: DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264: DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:264: DeprecationWarning:
`scipy.integrate.quadrature` is deprecated as of SciPy 1.12.0and will be removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:302: DeprecationWarning:
scipy.misc.derivative is deprecated in SciPy v1.10.0; and will be completely removed in SciPy v1.12.0. You may consider using findiff: https://github.com/maroba/findiff or numdifftools: https://github.com/pbrod/numdifftools
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:303: DeprecationWarning:
scipy.misc.derivative is deprecated in SciPy v1.10.0; and will be completely removed in SciPy v1.12.0. You may consider using findiff: https://github.com/maroba/findiff or numdifftools: https://github.com/pbrod/numdifftools
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/pymatgen/analysis/quasiharmonic.py:304: DeprecationWarning:
scipy.misc.derivative is deprecated in SciPy v1.10.0; and will be completely removed in SciPy v1.12.0. You may consider using findiff: https://github.com/maroba/findiff or numdifftools: https://github.com/pbrod/numdifftools
________________ TestSpacegroupAnalyzer.test_get_crystal_system ________________
self = <tests.symmetry.test_analyzer.TestSpacegroupAnalyzer testMethod=test_get_crystal_system>
def test_get_crystal_system(self):
crystal_system = self.sg.get_crystal_system()
assert crystal_system == "orthorhombic"
assert self.disordered_sg.get_crystal_system() == "tetragonal"
orig_spg = self.sg._space_group_data["number"]
> self.sg._space_group_data["number"] = 0
E TypeError: 'SpglibDataset' object does not support item assignment
/<<PKGBUILDDIR>>/.pybuild/test_python3.12/tests/symmetry/test_analyzer.py:175: TypeError
----------------------------- Captured stderr call -----------------------------
/usr/lib/python3/dist-packages/spglib/spglib.py:115: DeprecationWarning:
dict interface (SpglibDataset['number']) is deprecated.Use attribute interface ({self.__class__.__name__}.{key}) instead
/usr/lib/python3/dist-packages/spglib/spglib.py:115: DeprecationWarning:
dict interface (SpglibDataset['number']) is deprecated.Use attribute interface ({self.__class__.__name__}.{key}) instead
/usr/lib/python3/dist-packages/spglib/spglib.py:115: DeprecationWarning:
dict interface (SpglibDataset['number']) is deprecated.Use attribute interface ({self.__class__.__name__}.{key}) instead
============================= slowest 30 durations =============================
23.87s call .pybuild/test_python3.12/tests/electronic_structure/test_plotter.py::TestBSPlotterProjected::test_methods
21.35s call .pybuild/test_python3.12/tests/ext/test_optimade.py::TestOptimade::test_update_aliases
17.62s call .pybuild/test_python3.12/tests/analysis/test_fragmenter.py::TestFragmentMolecule::test_pc_then_ec_depth_10
17.58s call .pybuild/test_python3.12/tests/symmetry/test_kpath_lm.py::TestKPathLatimerMunro::test_kpath_generation
14.85s call .pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_plot
10.67s call .pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_as_from_dict
10.66s call .pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_thermal_conductivity_slack
10.61s call .pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_average_gruneisen
10.61s call .pybuild/test_python3.12/tests/io/vasp/test_outputs.py::TestVasprun::test_runtype
10.50s call .pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_tdos
10.47s call .pybuild/test_python3.12/tests/io/test_phonopy.py::TestGruneisen::test_gruneisen_parameter
10.46s call .pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_frequencies
10.40s call .pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_phdos
10.37s call .pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_acoustic_debye_temp
10.35s call .pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_multi
10.20s call .pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_gruneisen
10.09s call .pybuild/test_python3.12/tests/analysis/elasticity/test_elastic.py::TestElasticTensorExpansion::test_get_yield_stress
10.05s call .pybuild/test_python3.12/tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_debye_temp_phonopy
9.95s call .pybuild/test_python3.12/tests/analysis/test_structure_analyzer.py::TestMiscFunction::test_average_coordination_number
9.73s call .pybuild/test_python3.12/tests/io/vasp/test_optics.py::TestVasprun::test_optics
9.55s call .pybuild/test_python3.12/tests/core/test_surface.py::TestSlabGenerator::test_non_stoichiometric_symmetrized_slab
9.04s call .pybuild/test_python3.12/tests/symmetry/test_kpath_sc.py::TestBandStructureSC::test_kpath_generation
8.65s call .pybuild/test_python3.12/tests/analysis/test_prototypes.py::TestAflowPrototypeMatcher::test_prototype_matching
8.10s call .pybuild/test_python3.12/tests/io/test_packmol.py::TestPackmolSet::test_chdir_behavior
7.72s call .pybuild/test_python3.12/tests/io/lobster/test_inputs.py::TestFatband::test_attributes
7.28s call .pybuild/test_python3.12/tests/symmetry/test_groups.py::TestSpaceGroup::test_order_symm_ops
6.71s call .pybuild/test_python3.12/tests/entries/test_entry_tools.py::TestEntrySet::test_ground_states
6.61s call .pybuild/test_python3.12/tests/core/test_surface.py::TestSlab::test_symmetrization
6.03s call .pybuild/test_python3.12/tests/io/lobster/test_lobsterenv.py::TestLobsterNeighbors::test_get_info_cohps_to_neighbors
5.83s call .pybuild/test_python3.12/tests/core/test_trajectory.py::TestTrajectory::test_extend
=========================== short test summary info ============================
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_openff.py:25: could not import 'openff.toolkit': No module named 'openff'
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_shengbte.py:11: could not import 'f90nml': No module named 'f90nml'
SKIPPED [1] .pybuild/test_python3.12/tests/analysis/magnetism/test_analyzer.py:255: enumlib not present
SKIPPED [1] .pybuild/test_python3.12/tests/analysis/test_graphs.py:341: graphviz executables not present
SKIPPED [1] .pybuild/test_python3.12/tests/analysis/test_local_env.py:1333: critic2 executable not present
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_bader_caller.py:118: bader executable not present
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_bader_caller.py:86: bader executable not present
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_bader_caller.py:68: bader executable not present
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_bader_caller.py:133: bader executable not present
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_critic2_caller.py:26: critic2 executable not present
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_critic2_caller.py:62: critic2 executable not present
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_enumlib_caller.py:92: enum_lib not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_enumlib_caller.py:80: enum_lib not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_enumlib_caller.py:122: enum_lib not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:41: gulp not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:68: gulp not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:169: gulp not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:142: gulp not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:212: gulp not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:248: gulp not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:108: gulp not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:133: gulp not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:138: gulp not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:129: gulp not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:114: gulp not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:124: gulp not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:120: gulp not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:259: gulp not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:194: gulp not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:290: gulp not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:302: gulp not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:285: gulp not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:326: gulp not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:315: gulp not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:322: gulp not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:333: gulp not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:329: gulp not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:353: gulp not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:343: gulp not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:349: gulp not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_gulp_caller.py:356: gulp not present.
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_mcsqs_caller.py:63: mcsqs executable not present
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_mcsqs_caller.py:97: mcsqs executable not present
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_mcsqs_caller.py:28: mcsqs executable not present
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_mcsqs_caller.py:47: mcsqs executable not present
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_mcsqs_caller.py:55: mcsqs executable not present
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_mcsqs_caller.py:73: mcsqs executable not present
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_mcsqs_caller.py:85: mcsqs executable not present
SKIPPED [1] .pybuild/test_python3.12/tests/command_line/test_vampire_caller.py:35: vampire executable not present
SKIPPED [1] .pybuild/test_python3.12/tests/core/test_structure.py:91: enumlib or mcsqs executable not present
SKIPPED [1] .pybuild/test_python3.12/tests/core/test_structure.py:1696: could not import 'chgnet': No module named 'chgnet'
SKIPPED [1] .pybuild/test_python3.12/tests/core/test_structure.py:1761: TODO remove skip once https://github.com/materialsvirtuallab/matgl/issues/238 is resolved
SKIPPED [1] .pybuild/test_python3.12/tests/core/test_structure.py:1673: could not import 'chgnet': No module named 'chgnet'
SKIPPED [1] .pybuild/test_python3.12/tests/core/test_structure.py:1773: TODO remove skip once https://github.com/materialsvirtuallab/matgl/issues/238 is resolved
SKIPPED [1] .pybuild/test_python3.12/tests/core/test_structure.py:1784: TODO remove skip once https://github.com/materialsvirtuallab/matgl/issues/238 is resolved
SKIPPED [1] .pybuild/test_python3.12/tests/core/test_structure.py:1793: TODO remove skip once https://github.com/materialsvirtuallab/matgl/issues/238 is resolved
SKIPPED [1] .pybuild/test_python3.12/tests/core/test_structure.py:2400: Pytorch and TBLite clash. https://github.com/materialsproject/pymatgen/pull/3060
SKIPPED [1] .pybuild/test_python3.12/tests/core/test_structure.py:2410: Pytorch and TBLite clash. https://github.com/materialsproject/pymatgen/pull/3060
SKIPPED [1] .pybuild/test_python3.12/tests/core/test_surface.py:667: This test relies on neighbor orders and is hard coded. Disable temporarily
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap.py:244: No x_trans.
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap.py:231: No x_trans.
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap.py:172: No x_trans.
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap.py:194: No x_trans.
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap.py:222: No x_trans.
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap.py:104: No FDINT
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap.py:126: No x_trans.
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap.py:198: No x_trans.
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap.py:135: No x_trans.
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap.py:119: No x_trans.
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap.py:89: No FDINT
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap.py:202: No x_trans.
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap.py:144: No x_trans.
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap.py:160: No x_trans.
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap.py:46: No x_trans.
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap2.py:79: No boltztrap2, skipping tests...
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap2.py:60: No boltztrap2, skipping tests...
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap2.py:98: No boltztrap2, skipping tests...
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap2.py:93: No boltztrap2, skipping tests...
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap2.py:127: No boltztrap2, skipping tests...
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap2.py:124: No boltztrap2, skipping tests...
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap2.py:119: No boltztrap2, skipping tests...
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap2.py:166: No boltztrap2, skipping tests...
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap2.py:151: No boltztrap2, skipping tests...
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap2.py:181: No boltztrap2, skipping tests...
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap2.py:193: No boltztrap2, skipping tests...
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap2.py:285: No boltztrap2, skipping tests...
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap2.py:254: No boltztrap2, skipping tests...
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_boltztrap2.py:311: No boltztrap2, skipping tests...
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_plotter.py:303: No x_trans executable found
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SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_plotter.py:345: No x_trans executable found
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_plotter.py:352: No x_trans executable found
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_plotter.py:359: No x_trans executable found
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SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_plotter.py:380: No x_trans executable found
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SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_plotter.py:401: No x_trans executable found
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SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_plotter.py:415: No x_trans executable found
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_plotter.py:422: No x_trans executable found
SKIPPED [1] .pybuild/test_python3.12/tests/electronic_structure/test_plotter.py:429: No x_trans executable found
SKIPPED [1] .pybuild/test_python3.12/tests/ext/test_cod.py:24: No mysql
SKIPPED [1] .pybuild/test_python3.12/tests/ext/test_cod.py:29: No mysql
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_ase.py:356: ase is present
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_cif.py:284: non-free PF*.cif test files are not available
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_jarvis.py:12: JARVIS-tools not loaded.
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_jarvis.py:20: JARVIS-tools not loaded.
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_zeopp.py:72: zeo not present
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_zeopp.py:41: zeo not present
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_zeopp.py:116: zeo not present
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_zeopp.py:85: zeo not present
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_zeopp.py:147: zeo not present
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_zeopp.py:136: zeo not present
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_zeopp.py:168: zeo not present
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_zeopp.py:184: file free_sph.cif not present
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_zeopp.py:207: zeo not present
SKIPPED [1] .pybuild/test_python3.12/tests/io/test_zeopp.py:228: zeo not present
SKIPPED [1] .pybuild/test_python3.12/tests/symmetry/test_kpath_hin.py:51: No seek path present.
SKIPPED [1] .pybuild/test_python3.12/tests/symmetry/test_kpath_hin.py:18: No seek path present.
SKIPPED [1] .pybuild/test_python3.12/tests/symmetry/test_kpaths.py:22: No seek path present.
SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:99: enum_lib not present.
SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:160: enum_lib not present.
SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:190: enum_lib not present.
SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:206: enum_lib not present.
SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:233: enum_lib not present.
SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:245: enum_lib not present.
SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:360: enum_lib not present.
SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:300: enum_lib not present.
SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:338: enum_lib not present.
SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:330: enum_lib not present.
SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:348: enum_lib not present.
SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:488: enum_lib not present.
SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:536: enum_lib not present.
SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:545: enum_lib not present.
SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:603: mcsqs not present.
SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:613: mcsqs not present.
SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:634: mcsqs not present.
SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:666: icet not installed.
SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:652: icet not installed.
SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:677: icet not installed.
SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_advanced_transformations.py:784: hiphive not present
SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_site_transformations.py:213: enum_lib not present.
SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_standard_transformations.py:221: enum_lib not present.
SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_standard_transformations.py:235: enum_lib not present.
SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_standard_transformations.py:246: enum_lib not present.
SKIPPED [1] .pybuild/test_python3.12/tests/transformations/test_standard_transformations.py:252: enum_lib not present.
SKIPPED [1] .pybuild/test_python3.12/tests/util/test_graph_hashing.py:44: could not import 'emmet.core.graph_hashing': No module named 'emmet.core.graph_hashing'
SKIPPED [1] .pybuild/test_python3.12/tests/util/test_graph_hashing.py:61: could not import 'emmet.core.graph_hashing': No module named 'emmet.core.graph_hashing'
=== 2 failed, 2434 passed, 154 skipped, 336 deselected in 782.98s (0:13:02) ====
..tot conformations = 3
..tot confs tested = 3
..below energy threshold = 3
make[1]: *** [debian/rules:107: override_dh_auto_test] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:92: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202409/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.
Thanks.
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