[Debichem-devel] Bug#1104387: mdanalysis: FTBFS randomly: E: Build killed with signal TERM after 150 minutes of inactivity

[Lucas Nussbaum]

Source: mdanalysis
Version: 2.9.0-7
Severity: important
Justification: FTBFS
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20250428 ftbfs-trixie ftbfs-randomly

Hi,

Your package fails to build randomly on amd64: In the exact same
environment, sometimes it builds fine, and sometimes it fails.

Relevant part (hopefully):
> testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[all-np_slice0-None-serial] PASSED [ 44%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[all-np_slice0-box1-serial] PASSED [ 44%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 0 to 8 -np_slice1-None-serial] PASSED [ 44%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 0 to 8 -np_slice1-box1-serial] PASSED [ 44%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 9-np_slice2-None-serial] PASSED [ 44%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 9-np_slice2-box1-serial] PASSED [ 44%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy_tric[index 0 to 8 -np_slice0-serial] PASSED [ 44%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy_tric[index 9-np_slice1-serial] PASSED [ 44%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_transforms[S_mol-serial] PASSED [ 44%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_transforms[S_mol_single-serial] PASSED [ 44%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_selfdist[serial] PASSED [ 44%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_distarray[serial] PASSED [ 44%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_pbc_dist[serial] PASSED [ 44%]
> testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_pbc_wrong_wassenaar_distance[serial] PASSED [ 44%]
> testsuite/MDAnalysisTests/lib/test_distances.py::test_issue_3725[None] 
> E: Build killed with signal TERM after 150 minutes of inactivity


The full build log is available from:
http://qa-logs.debian.net/2025/04/28/mdanalysis_2.9.0-7_unstable.log

You can find other build logs (including successful ones) in:
http://qa-logs.debian.net/2025/04/28/

All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20250428;users=lucas@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20250428&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.