[Debichem-devel] Bug#1110624: libpwiz ftbfs with boost 1.88

[Matthias Klose]

Package: src:libpwiz
Version: 3.0.18342-4.2
Severity: important
Tags: sid forky
User: debian-devel at lists.debian.org
Usertags: boost1.88

libpwiz ftbfs with boost 1.88:

[...]
x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"libpwiz\" 
-DPACKAGE_TARNAME=\"libpwiz\" -DPACKAGE_VERSION=\"3.0.18344\" 
-DPACKAGE_STRING=\"libpwiz\ 3.0.18344\" 
-DPACKAGE_BUGREPORT=\"proteowizard-support at lists.sourceforge.net\" 
-DPACKAGE_URL=\"\" -DPACKAGE=\"libpwiz\" -DVERSION=\"3.0.18344\" 
-DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 
-DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 
-DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SYS_TIME_H=1 
-DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" 
-DHAVE_FCNTL_H=1 -DHAVE_FLOAT_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 
-DHAVE_MEMORY_H=1 -DHAVE_NETINET_IN_H=1 -DHAVE_STDINT_H=1 
-DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 
-DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -Drestrict=__restrict__ 
-DHAVE_PTRDIFF_T=1 -DHAVE_MALLOC=1 -DHAVE_ALARM=1 -DHAVE_REALLOC=1 
-DHAVE_ATEXIT=1 -DHAVE_MEMMOVE=1 -DHAVE_MEMSET=1 -DHAVE_MKDIR=1 
-DHAVE_MODF=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 -DHAVE_STRDUP=1 
-DHAVE_STRERROR=1 -DHAVE_STRPBRK=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 
-DHAVE_STRTOL=1 -DHAVE_STRTOUL=1 -DHAVE_STRTOULL=1 -DHAVE_BOOST=1 
-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 
-DHAVE_BOOST_THREAD_HPP=1 -DHAVE_BOOST_THREAD=1 
-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 
-DHAVE_BOOST_FILESYSTEM_PATH_HPP=1 -DHAVE_BOOST_FILESYSTEM=1 
-DHAVE_BOOST_REGEX_HPP=1 -DHAVE_BOOST_REGEX=1 
-DHAVE_BOOST_ARCHIVE_TEXT_OARCHIVE_HPP=1 -DHAVE_BOOST_SERIALIZATION=1 
-DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 -DHAVE_BOOST_SYSTEM=1 
-DHAVE_BOOST_IOSTREAMS_DEVICE_FILE_DESCRIPTOR_HPP=1 
-DHAVE_BOOST_IOSTREAMS=1 
-DHAVE_BOOST_DATE_TIME_POSIX_TIME_POSIX_TIME_HPP=1 
-DHAVE_BOOST_DATE_TIME=1 -DHAVE_BOOST_PROGRAM_OPTIONS_HPP=1 
-DHAVE_BOOST_PROGRAM_OPTIONS=1 -DHAVE_BOOST_SYSTEM_ERROR_CODE_HPP=1 
-DHAVE_BOOST_SYSTEM=1 -DHAVE_BOOST_CHRONO_HPP=1 -DHAVE_BOOST_CHRONO=1 
-I. -Iautotools  -pthread -I"libraries/boost_aux" 
-I"pwiz/data/msdata/ramp" -I"libraries/Eigen" -I"libraries/CSpline" 
-DWITHOUT_MZ5 -DBOOST_DISABLE_ASSERTS -DBOOST_NOWIDE_NO_LIB=1 
-DNO_MASCOT_READER -I "/usr/include/eigen3/Eigen" -I 
"/<<PKGBUILDDIR>>/debian/build/libraries/Eigen" -I 
"/<<PKGBUILDDIR>>/debian/build/libraries/libsvm-3.0" -Wdate-time 
-D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer 
-mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-flto=auto -ffat-lto-objects -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security 
-fcf-protection 
-fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/libpwiz-3.0.18342-4.2build2 
-Wdate-time -D_FORTIFY_SOURCE=3 -MT pwiz_tools/examples/txt2mzml.o -MD 
-MP -MF $depbase.Tpo -c -o pwiz_tools/examples/txt2mzml.o 
pwiz_tools/examples/txt2mzml.cpp &&\
mv -f $depbase.Tpo $depbase.Po
In file included from pwiz_tools/examples/txt2mzml.cpp:26:
./pwiz/utility/misc/Filesystem.hpp:37:10: fatal error: 
boost/filesystem/convenience.hpp: No such file or directory
    37 | #include <boost/filesystem/convenience.hpp>
       |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
make[1]: *** [Makefile:5457: pwiz_tools/examples/txt2mzml.o] Error 1