[Debichem-devel] Bug#1110632: libpwizlite ftbfs with boost 1.88

[Matthias Klose]

Package: src:libpwizlite
Version: 3.0.8-1
Severity: important
Tags: sid forky
User: debian-devel at lists.debian.org
Usertags: boost1.88

libpwizlite ftbfs with boost 1.88:

[...]
[ 30%] Building CXX object 
src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++ 
-DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK 
-DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK 
-DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK 
-DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB 
-DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK 
-DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB 
-DWITHOUT_MZ5 -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src 
-I/<<PKGBUILDDIR>>/src -I/<<PKGBUILDDIR>>/src/boost -isystem 
/usr/include/hdf5/serial -g -O2 -fno-omit-frame-pointer 
-mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-flto=auto -ffat-lto-objects -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security 
-fcf-protection 
-fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/libpwizlite-3.0.8-1build3 
-Wdate-time -D_FORTIFY_SOURCE=3 -O3 -DNDEBUG -std=gnu++17 
-Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT 
src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o 
-MF 
CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o.d 
-o 
CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o 
-c /<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member 
function ‘virtual pwiz::minimxml::SAXParser::Handler::Status 
pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const 
std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, 
pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: 
warning: unused parameter ‘position’ [-Wunused-parameter]
   121 |                                 stream_offset position)
       |                                 ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member 
function ‘virtual pwiz::minimxml::SAXParser::Handler::Status 
pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, 
pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:162:45: 
warning: unused parameter ‘position’ [-Wunused-parameter]
   162 |                               stream_offset position)
       |                               ~~~~~~~~~~~~~~^~~~~~~~
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member 
function ‘virtual pwiz::minimxml::SAXParser::Handler::Status 
pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const 
std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)’:
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: 
warning: unused parameter ‘position’ [-Wunused-parameter]
   356 |                               stream_offset position)
       |                               ~~~~~~~~~~~~~~^~~~~~~~
In file included from 
/<<PKGBUILDDIR>>/src/pwiz/data/msdata/DefaultReaderList.cpp:27:
/<<PKGBUILDDIR>>/src/pwiz/utility/misc/Filesystem.hpp:37:10: fatal 
error: boost/filesystem/convenience.hpp: No such file or directory
    37 | #include <boost/filesystem/convenience.hpp>
       |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
make[3]: *** [src/CMakeFiles/pwizlite-static.dir/build.make:278: 
src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o] 
Error 1