[Debichem-devel] Bug#1107330: Bug#1107330: openbabel: autopkgtest uses incredible amount of memory on s390x

Pranav P pranav.p7 at ibm.com
Tue Aug 19 07:02:50 BST 2025


Hi,

https://github.com/openbabel/openbabel/pull/2816
With this pull request both the memory usage issue and other test case failures should be fixed.

But I had the following issue during autopkgtest:

Some packages could not be installed. This may mean that you have
requested an impossible situation or if you are using the unstable
distribution that some required packages have not yet been created
or been moved out of Incoming.
The following information may help to resolve the situation:

The following packages have unmet dependencies:
 libchemistry-openbabel-perl : Depends: perl (>= 5.40.1-6) but 5.40.1-3 is to be installed
 libopenbabel7 : Depends: libxml2-16 (>= 2.14.1) but it is not installable
E: Unable to correct problems, you have held broken packages.
python3              FAIL badpkg
blame: arg:/home/pranav/debs/openbabel/libchemistry-openbabel-perl-dbgsym_3.1.1+dfsg-12_s390x.deb deb:libchemistry-openbabel-perl-dbgsym arg:/home/pranav/debs/openbabel/libchemistry-openbabel-perl_3.1.1+dfsg-12_s390x.deb deb:libchemistry-openbabel-perl arg:/home/pranav/debs/openbabel/libopenbabel-dev_3.1.1+dfsg-12_s390x.deb deb:libopenbabel-dev arg:/home/pranav/debs/openbabel/libopenbabel-doc_3.1.1+dfsg-12_all.deb deb:libopenbabel-doc arg:/home/pranav/debs/openbabel/libopenbabel7-dbgsym_3.1.1+dfsg-12_s390x.deb deb:libopenbabel7-dbgsym arg:/home/pranav/debs/openbabel/libopenbabel7_3.1.1+dfsg-12_s390x.deb deb:libopenbabel7 arg:/home/pranav/debs/openbabel/openbabel-dbgsym_3.1.1+dfsg-12_s390x.deb deb:openbabel-dbgsym arg:/home/pranav/debs/openbabel/openbabel-gui-dbgsym_3.1.1+dfsg-12_s390x.deb deb:openbabel-gui-dbgsym arg:/home/pranav/debs/openbabel/openbabel-gui_3.1.1+dfsg-12_s390x.deb deb:openbabel-gui arg:/home/pranav/debs/openbabel/openbabel_3.1.1+dfsg-12_s390x.deb deb:openbabel arg:/home/pranav/debs/openbabel/python3-openbabel-dbgsym_3.1.1+dfsg-12_s390x.deb deb:python3-openbabel-dbgsym arg:/home/pranav/debs/openbabel/python3-openbabel_3.1.1+dfsg-12_s390x.deb deb:python3-openbabel /home/pranav/debs/openbabel/openbabel_3.1.1+dfsg-12.dsc
badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U.
autopkgtest [23:54:16]: @@@@@@@@@@@@@@@@@@@@ summary
python3              FAIL badpkg
blame: arg:/home/pranav/debs/openbabel/libchemistry-openbabel-perl-dbgsym_3.1.1+dfsg-12_s390x.deb deb:libchemistry-openbabel-perl-dbgsym arg:/home/pranav/debs/openbabel/libchemistry-openbabel-perl_3.1.1+dfsg-12_s390x.deb deb:libchemistry-openbabel-perl arg:/home/pranav/debs/openbabel/libopenbabel-dev_3.1.1+dfsg-12_s390x.deb deb:libopenbabel-dev arg:/home/pranav/debs/openbabel/libopenbabel-doc_3.1.1+dfsg-12_all.deb deb:libopenbabel-doc arg:/home/pranav/debs/openbabel/libopenbabel7-dbgsym_3.1.1+dfsg-12_s390x.deb deb:libopenbabel7-dbgsym arg:/home/pranav/debs/openbabel/libopenbabel7_3.1.1+dfsg-12_s390x.deb deb:libopenbabel7 arg:/home/pranav/debs/openbabel/openbabel-dbgsym_3.1.1+dfsg-12_s390x.deb deb:openbabel-dbgsym arg:/home/pranav/debs/openbabel/openbabel-gui-dbgsym_3.1.1+dfsg-12_s390x.deb deb:openbabel-gui-dbgsym arg:/home/pranav/debs/openbabel/openbabel-gui_3.1.1+dfsg-12_s390x.deb deb:openbabel-gui arg:/home/pranav/debs/openbabel/openbabel_3.1.1+dfsg-12_s390x.deb deb:openbabel arg:/home/pranav/debs/openbabel/python3-openbabel-dbgsym_3.1.1+dfsg-12_s390x.deb deb:python3-openbabel-dbgsym arg:/home/pranav/debs/openbabel/python3-openbabel_3.1.1+dfsg-12_s390x.deb deb:python3-openbabel /home/pranav/debs/openbabel/openbabel_3.1.1+dfsg-12.dsc
badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U.

E: Autopkgtest run failed.

Thanks,
Pranav


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