[Debichem-devel] Bug#1092544: python-pymzml: FTBFS: mv: cannot stat 'debian/python3-pymzml/usr/lib/python3.13/dist-packages/test.dat.igzip': No such file or directory

[Lucas Nussbaum]

Source: python-pymzml
Version: 2.5.10+repack1-1
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20250107 ftbfs-trixie

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.


Relevant part (hopefully):
> make[1]: Entering directory '/build/reproducible-path/python-pymzml-2.5.10+repack1'
> dh_install
> 	install -m0755 -d debian/python-pymzml-doc/usr/share/doc/python3-pymzml
> 	cp --reflink=auto -a ./README.rst ./debian/doc/html/ ./tests debian/python-pymzml-doc/usr/share/doc/python3-pymzml/
> 	install -m0755 -d debian/python-pymzml-doc/usr/share/doc/python3-pymzml/example_scripts
> 	cp --reflink=auto -a ./example_scripts/_playground2.py ./example_scripts/access_run_info.py ./example_scripts/compare_spectra.py ./example_scripts/deprecation_check.py ./example_scripts/download_obo_database.py ./example_scripts/extract_ion_chromatogram.py ./example_scripts/extreme_values.py ./example_scripts/get_example_file.py ./example_scripts/get_precursors.py ./example_scripts/gzip_mzml.py ./example_scripts/has_peak.py ./example_scripts/highest_peaks.py ./example_scripts/multi_threading_file_compression.py ./example_scripts/plot_chromatogram.py ./example_scripts/plot_spectrum.py ./example_scripts/plot_spectrum_with_annotation.py ./example_scripts/polarity.py ./example_scripts/queryOBO.py ./example_scripts/simple_parser.py ./example_scripts/simple_parser_v2.py ./example_scripts/tic_calc.py debian/python-pymzml-doc/usr/share/doc/python3-pymzml/example_scripts/
> # Remove the symbolic link.
> rm -vf debian/python3-pymzml/usr/share/doc/python3-pymzml/example_scripts/pymzml
> #
> # Remove all the pyc files.
> rm -vf debian/python3-pymzml/usr/share/doc/python3-pymzml/example_scripts/*.pyc
> #
> # Remove the license file
> rm -vf debian/python3-pymzml/usr/share/doc/python3-pymzml/COPYING.txt
> rm -vf debian/python3-pymzml-doc/usr/share/doc/python-pymzml-doc/COPYING.txt
> #
> # Make sure we list properly all the binary files that are made during
> # the documentation build in debian/source/include-binaries:
> sh debian/list-binary-files.sh
> #
> # Remove the exec bit from all the *.gz files.
> chmod a-x debian/python3-pymzml/usr/lib/python3.*/dist-packages/pymzml/obo/*.gz
> # Same for version.txt
> chmod a-x debian/python3-pymzml/usr/lib/python3.*/dist-packages/pymzml/version.txt
> #
> # Move the test.dat.igzip file erroneously installed to dist-packages/.
> mv debian/python3-pymzml/usr/lib/python3.13/dist-packages/test.dat.igzip debian/python3-pymzml/usr/lib/python3.13/dist-packages/pymzml
> mv: cannot stat 'debian/python3-pymzml/usr/lib/python3.13/dist-packages/test.dat.igzip': No such file or directory
> make[1]: *** [debian/rules:53: override_dh_install] Error 1


The full build log is available from:
http://qa-logs.debian.net/2025/01/07/python-pymzml_2.5.10+repack1-1_unstable.log

All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20250107;users=lucas@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20250107&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.