[Debichem-devel] Bug#1093323: chemicaltagger: FTBFS: Could not resolve dependencies for project uk.ac.cam.ch.wwmm:chemicalTagger:jar:1.6.2

[Santiago Vila]

Package: src:chemicaltagger
Version: 1.6.2-4
Severity: serious
Tags: ftbfs trixie sid

Dear maintainer:

During a rebuild of all packages in unstable, your package failed to build:

--------------------------------------------------------------------------------
[...]
 debian/rules clean
dh clean
   dh_auto_clean
	bash -c "for dir in \$(find . -name target -type d); do if [ -f \$(echo \$dir | sed -e s/target\$/pom.xml/) ]; then rm -Rf \$dir; fi done"
	mh_unpatchpoms -plibchemicaltagger-java
   dh_clean
 debian/rules binary
dh binary
   dh_update_autotools_config
   dh_autoreconf
   dh_auto_configure
	mh_patchpoms -plibchemicaltagger-java --debian-build --keep-pom-version --maven-repo=/<<PKGBUILDDIR>>/debian/maven-repo
   dh_auto_build
	/usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/<<PKGBUILDDIR>> -Dclassworlds.conf=/etc/maven/m2-debian.conf -Dproperties.file.manual=/<<PKGBUILDDIR>>/debian/maven.properties org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/<<PKGBUILDDIR>>/debian -Dmaven.repo.local=/<<PKGBUILDDIR>>/debian/maven-repo --batch-mode package -DskipTests -Dnotimestamp=true -Dlocale=en_US
OpenJDK 64-Bit Server VM warning: Options -Xverify:none and -noverify were deprecated in JDK 13 and will likely be removed in a future release.
[INFO] Scanning for projects...
[INFO] 
[INFO] ------------------< uk.ac.cam.ch.wwmm:chemicalTagger >------------------
[INFO] Building chemicalTagger 1.6.2
[INFO]   from pom.xml
[INFO] --------------------------------[ jar ]---------------------------------
[WARNING] Parameter 'grammars' is unknown for plugin 'antlr4-maven-plugin:4.9.2:antlr4 (default)'
[WARNING] Parameter 'messageFormat' is unknown for plugin 'antlr4-maven-plugin:4.9.2:antlr4 (default)'
[WARNING] Parameter 'conversionTimeout' is unknown for plugin 'antlr4-maven-plugin:4.9.2:antlr4 (default)'
[WARNING] Parameter 'verbose' is unknown for plugin 'antlr4-maven-plugin:4.9.2:antlr4 (default)'
[WARNING] The artifact org.apache.maven.plugins:maven-surefire-plugin:jar:2.17 has been relocated to org.apache.maven.plugins:maven-surefire-plugin:jar:2.22.3
[WARNING] The artifact org.apache.maven.plugins:maven-jar-plugin:jar:3.1.2 has been relocated to org.apache.maven.plugins:maven-jar-plugin:jar:3.3.0
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  0.202 s
[INFO] Finished at: 2025-01-17T16:00:50Z
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal on project chemicalTagger: Could not resolve dependencies for project uk.ac.cam.ch.wwmm:chemicalTagger:jar:1.6.2
[ERROR] dependency: dk.brics.automaton:automaton:jar:debian (compile)
[ERROR] 	Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact dk.brics.automaton:automaton:jar:debian has not been downloaded from it before.
[ERROR] -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException
dh_auto_build: error: /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/<<PKGBUILDDIR>> -Dclassworlds.conf=/etc/maven/m2-debian.conf -Dproperties.file.manual=/<<PKGBUILDDIR>>/debian/maven.properties org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/<<PKGBUILDDIR>>/debian -Dmaven.repo.local=/<<PKGBUILDDIR>>/debian/maven-repo --batch-mode package -DskipTests -Dnotimestamp=true -Dlocale=en_US returned exit code 1
make: *** [debian/rules:4: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------

The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:

https://people.debian.org/~sanvila/build-logs/202501/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:chemicaltagger, so that this is still
visible in the BTS web page for this package.

Thanks.