[Debichem-devel] Bug#1093352: psi4: FTBFS: error: could not find git for clone of qcelemental_external

Santiago Vila sanvila at debian.org
Fri Jan 17 18:54:01 GMT 2025 

Package: src:psi4
Version: 1:1.3.2+dfsg-5
Severity: serious
Tags: ftbfs trixie sid

Dear maintainer:

During a rebuild of all packages in unstable, your package failed to build:

--------------------------------------------------------------------------------
[...]
 debian/rules clean
dh clean --builddirectory=builddir --with python3
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean --builddirectory=builddir
find /<<PKGBUILDDIR>> -name "*.pyc" -delete
rm -f -r /<<PKGBUILDDIR>>/builddir/tmp-scratch
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--builddirectory=builddir
   dh_clean -O--builddirectory=builddir
 debian/rules binary
dh binary --builddirectory=builddir --with python3
   dh_update_autotools_config -O--builddirectory=builddir
   dh_autoreconf -O--builddirectory=builddir

[... snipped ...]

//Enables mostly static linking of language libraries for shared
// library
ENABLE_GENERIC:STRING=OFF

//Enables memory sanitizer (requires similarly compiled Python
// and Numpy)
ENABLE_MSAN:BOOL=OFF

//Enables OpenMP parallelization
ENABLE_OPENMP:BOOL=ON

//Enables PCMSolver library (requires Fortran)
ENABLE_PCMSolver:BOOL=OFF

//Test the plugin templates build and run
ENABLE_PLUGIN_TESTING:BOOL=OFF

//Enables thread sanitizer (requires similarly compiled Python
// and Numpy)
ENABLE_TSAN:BOOL=OFF

//Enables undefined behavior sanitizer (requires similarly compiled
// Python and Numpy)
ENABLE_UBSAN:BOOL=OFF

//Enables processor-specific optimization (with MSVC, it enables
// AVX2 instructions)
ENABLE_XHOST:BOOL=0

//Enables the ambit tensor library
ENABLE_ambit:BOOL=OFF

//Enables ccsort plugin installed from psi4pasture
ENABLE_ccsort:BOOL=OFF

//Enables DKH integrals (requires Fortran)
ENABLE_dkh:BOOL=OFF

//Enables use of ERD instead of Libint (requires Fortran)
ENABLE_erd:BOOL=OFF

//Enables Stone's GDMA multipole code (requires Fortran)
ENABLE_gdma:BOOL=OFF

//Enables GPU_DFCC plugin for gpu-accelerated df-cc (requires CUDA;
// can also be added at runtime)
ENABLE_gpu_dfcc:BOOL=OFF

//Enables LIBEFP and PylibEFP for fragments
ENABLE_libefp:BOOL=OFF

//Enables use of SIMINT two-electron integral library
ENABLE_simint:BOOL=OFF

//Enables SNSMP2 plugin (can also be added at runtime)
ENABLE_snsmp2:BOOL=OFF

//Enables transqt2 plugin installed from psi4pasture
ENABLE_transqt2:BOOL=OFF

//Enables V2RDM_CASSCF plugin (requires Fortran; can also be added
// at runtime)
ENABLE_v2rdm_casscf:BOOL=OFF

//The type of Fortran name mangling
FC_SYMBOL:STRING=2

//No help, variable specified on the command line.
FETCHCONTENT_FULLY_DISCONNECTED:UNINITIALIZED=ON

//Git command line client
GIT_EXECUTABLE:FILEPATH=GIT_EXECUTABLE-NOTFOUND

//HDF5 C Wrapper compiler.  Used only to detect HDF5 compile flags.
HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5cc

//Path to a library.
HDF5_C_LIBRARY_crypto:FILEPATH=/usr/lib/x86_64-linux-gnu/libcrypto.so

//Path to a library.
HDF5_C_LIBRARY_curl:FILEPATH=/usr/lib/x86_64-linux-gnu/libcurl.so

//Path to a library.
HDF5_C_LIBRARY_dl:FILEPATH=/usr/lib/x86_64-linux-gnu/libdl.a

//Path to a library.
HDF5_C_LIBRARY_hdf5:FILEPATH=/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so

//Path to a library.
HDF5_C_LIBRARY_m:FILEPATH=/usr/lib/x86_64-linux-gnu/libm.so

//Path to a library.
HDF5_C_LIBRARY_pthread:FILEPATH=/usr/lib/x86_64-linux-gnu/libpthread.a

//Path to a library.
HDF5_C_LIBRARY_sz:FILEPATH=/usr/lib/x86_64-linux-gnu/libsz.so

//Path to a library.
HDF5_C_LIBRARY_z:FILEPATH=/usr/lib/x86_64-linux-gnu/libz.so

//HDF5 file differencing tool.
HDF5_DIFF_EXECUTABLE:FILEPATH=HDF5_DIFF_EXECUTABLE-NOTFOUND

//The directory containing a CMake configuration file for HDF5.
HDF5_DIR:PATH=HDF5_DIR-NOTFOUND

//LAPACK libraries
LAPACK_LIBRARIES:STRING=/usr/lib/x86_64-linux-gnu/liblapack.so

//LAPACK type
LAPACK_TYPE:STRING=SYSTEM_NATIVE

//Maximum angular momentum for integrals
MAX_AM_ERI:STRING=5

//CXX compiler flags for OpenMP parallelization
OpenMP_CXX_FLAGS:STRING=-fopenmp

//CXX compiler libraries for OpenMP parallelization
OpenMP_CXX_LIB_NAMES:STRING=gomp;pthread

//C compiler flags for OpenMP parallelization
OpenMP_C_FLAGS:STRING=-fopenmp

//C compiler libraries for OpenMP parallelization
OpenMP_C_LIB_NAMES:STRING=gomp;pthread

//Path to the gomp library for OpenMP
OpenMP_gomp_LIBRARY:FILEPATH=/usr/lib/gcc/x86_64-linux-gnu/14/libgomp.so

//Path to the pthread library for OpenMP
OpenMP_pthread_LIBRARY:FILEPATH=/usr/lib/x86_64-linux-gnu/libpthread.a

//Python version to use for compiling modules
PYBIND11_PYTHON_VERSION:STRING=

//Location within CMAKE_INSTALL_LIBDIR to which python modules
// are installed
PYMOD_INSTALL_LIBDIR:STRING=/

//Path to a program.
PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3

//Path to a library.
PYTHON_LIBRARY:FILEPATH=/usr/lib/x86_64-linux-gnu/libpython3.13.so

//Vectorization type to use for simint (scalar sse avx avxfma micavx512)
SIMINT_VECTOR:STRING=avx

//Theme for Sphinx documentation and extensions
SPHINX_THEME:STRING=sphinx_psi_theme

//Value Computed by CMake
TargetHDF5_BINARY_DIR:STATIC=/<<PKGBUILDDIR>>/builddir/external/common/hdf5

//path to externally detected CheMPS2Config.cmake
TargetHDF5_DIR:PATH=/<<PKGBUILDDIR>>/builddir/stage/share/cmake/TargetHDF5

//Value Computed by CMake
TargetHDF5_IS_TOP_LEVEL:STATIC=OFF

//Value Computed by CMake
TargetHDF5_SOURCE_DIR:STATIC=/<<PKGBUILDDIR>>/external/common/hdf5

//Value Computed by CMake
TargetLAPACK_BINARY_DIR:STATIC=/<<PKGBUILDDIR>>/builddir/external/common/lapack

//path to externally detected TargetLAPACKConfig.cmake
TargetLAPACK_DIR:PATH=/<<PKGBUILDDIR>>/builddir/stage/share/cmake/TargetLAPACK

//Value Computed by CMake
TargetLAPACK_IS_TOP_LEVEL:STATIC=OFF

//Value Computed by CMake
TargetLAPACK_SOURCE_DIR:STATIC=/<<PKGBUILDDIR>>/external/common/lapack

//Path to a library.
_temp:FILEPATH=/usr/lib/x86_64-linux-gnu/libchemps2.so

//Path to a program.
_temp_exe:FILEPATH=/usr/bin/chemps2

//Path to a file.
_temp_h:PATH=/usr/include

//The directory containing a CMake configuration file for gau2grid.
gau2grid_DIR:PATH=/usr/share/cmake/gau2grid

//Value Computed by CMake
psi4_BINARY_DIR:STATIC=/<<PKGBUILDDIR>>/builddir

//Specify C++ standard for core Psi4
psi4_CXX_STANDARD:STRING=14

//Value Computed by CMake
psi4_IS_TOP_LEVEL:STATIC=ON

//Value Computed by CMake
psi4_SOURCE_DIR:STATIC=/<<PKGBUILDDIR>>

//The directory containing a CMake configuration file for pybind11.
pybind11_DIR:PATH=/usr/lib/cmake/pybind11


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dh_auto_configure: error: cd builddir && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_BUILD_TYPE=RelWithDebInfo -DPYTHON_EXECUTABLE=/usr/bin/python3 -DENABLE_XHOST=0 -DENABLE_CheMPS2=ON .. returned exit code 1
make[1]: *** [debian/rules:19: override_dh_auto_configure] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:11: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------

The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:

https://people.debian.org/~sanvila/build-logs/202501/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:psi4, so that this is still
visible in the BTS web page for this package.

Thanks.

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