[Debichem-devel] Bug#1093359: smiles-scripts: FTBFS: failing tests
Santiago Vila
sanvila at debian.org
Fri Jan 17 18:54:15 GMT 2025
Package: src:smiles-scripts
Version: 0.2.0+svn754+branch+system+deps-1
Severity: serious
Tags: ftbfs trixie sid
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean
dh_auto_clean
make -j2 distclean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f tests/outputs/cdkcif2smiles_001.diff tests/outputs/cdkcif2smiles_002.diff tests/outputs/cdkcif2smiles_003.diff tests/outputs/cdkcif2xyz_001.diff tests/outputs/cdkcif2xyz_002.diff tests/outputs/cdkcif2xyz_003.diff tests/outputs/cdkdepict-cgi_001.diff tests/outputs/cdkdepict-cgi_002.diff tests/outputs/cdkdepict_001.diff tests/outputs/cdkdepict_002.diff tests/outputs/cdkdepict_003.diff tests/outputs/cdkdepict_004.diff tests/outputs/cdkdepict_005.diff tests/outputs/cdkdepict_006.diff tests/outputs/cdkdepict_007.diff tests/outputs/cdkdepict_008.diff tests/outputs/cdkdepict_009.diff tests/outputs/cdkdepict_010.diff tests/outputs/cdkdepict_021.diff tests/outputs/cdkdepict_022.diff tests/outputs/cdkdepict_023.diff tests/outputs/cdkrecharge_001.diff tests/outputs/cdkrecharge_002.diff tests/outputs/cdkrecharge_003.diff tests/outputs/cdkrecharge_004.diff tests/outputs/cdkrecharge_005.diff tests/outputs/cdkrecharge_006.diff tests/outputs/cdkrecharge_007.diff tests/outputs/cdkrecharge_008.diff tests/outputs/cdkrecharge_009.diff tests/outputs/cdkrecharge_010.diff tests/outputs/cdkrecharge_011.diff tests/outputs/cdkrecharge_012.diff tests/outputs/cdkrecharge_013.diff tests/outputs/cdkrecharge_014.diff tests/outputs/cdkrecharge_015.diff tests/outputs/cdkrecharge_016.diff tests/outputs/cdkrecharge_017.diff tests/outputs/cdkrecharge_018.diff tests/outputs/cdkrecharge_019.diff tests/outputs/cdkrecharge_020.diff tests/outputs/cdksdf2inchi_001.diff tests/outputs/cdksdf2inchi_002.diff tests/outputs/cdksdf2inchi_003.diff tests/outputs/cdksdf2inchi_004.diff tests/outputs/cdksdf2inchi_005.diff tests/outputs/cdksdf2inchi_006.diff tests/outputs/cdksdf2smiles_001.diff tests/outputs/cdksdf2smiles_002.diff tests/outputs/cdksdf2smiles_003.diff tests/outputs/cdksdf2smiles_004.diff tests/outputs/cdksdf2smiles_005.diff tests/outputs/cdksdf2smiles_006.diff tests/outputs/cdksdf2smiles_007.diff tests/outputs/cdksdf2smiles_008.diff tests/outputs/cdksdf2smiles_009.diff tests/outputs/cdksdf2smiles_010.diff tests/outputs/cml-to-smi_001.diff tests/outputs/cml-to-smi_002.diff tests/outputs/cml-to-smi_003.diff tests/outputs/cml-to-smi_004.diff tests/outputs/cml-to-smi_005.diff tests/outputs/cml-to-smi_006.diff tests/outputs/cml-to-smi_007.diff tests/outputs/cml-to-smi_008.diff tests/outputs/cml-to-smi_009.diff tests/outputs/opsin_001.diff tests/outputs/sdf-to-smi_001.diff tests/outputs/sdf-to-smi_002.diff tests/outputs/sdf-to-smi_003.diff tests/outputs/sdf-to-smi_004.diff tests/outputs/sdf-to-smi_005.diff tests/outputs/sdf-to-smi_006.diff tests/outputs/sdf-to-smi_007.diff tests/outputs/sdf-to-smi_008.diff tests/outputs/sdf-to-smi_009.diff tests/outputs/sdf-to-smi_010.diff tests/outputs/sdf-to-smi_011.diff tests/outputs/sdf-to-smi_012.diff tests/outputs/sdf-to-smi_013.diff tests/outputs/sdf-to-smi_014.diff tests/outputs/sdf-to-smi_015.diff tests/outputs/sdf-to-smi_016.diff tests/outputs/sdf-to-smi_017.diff tests/outputs/sdf-to-smi_018.diff tests/outputs/sdf-to-smi_019.diff tests/outputs/sdf-to-smi_020.diff tests/outputs/sdf-to-smi_021.diff tests/outputs/sdf-to-smi_022.diff tests/outputs/sdf-to-smi_023.diff tests/outputs/sdf-to-smi_024.diff tests/outputs/sdf-to-smi_025.diff tests/outputs/sdf-to-smi_026.diff tests/outputs/sdf-to-smi_027.diff tests/outputs/sdf-to-smi_028.diff tests/outputs/smi_canonicalise_001.diff tests/outputs/smi_canonicalise_002.diff tests/outputs/smi_canonicalise_003.diff tests/outputs/smi_canonicalise_004.diff tests/outputs/smi_canonicalise_005.diff tests/outputs/smi_canonicalise_006.diff tests/outputs/smi_canonicalise_007.diff tests/outputs/smi_canonicalise_008.diff tests/outputs/smi_canonicalise_009.diff tests/outputs/smi_canonicalise_010.diff tests/outputs/smi_canonicalise_011.diff tests/outputs/smi_canonicalise_012.diff tests/outputs/smi_canonicalise_013.diff tests/outputs/smi_canonicalise_014.diff tests/outputs/smi_canonicalise_015.diff tests/outputs/smi_canonicalise_016.diff tests/outputs/smi_canonicalise_017.diff tests/outputs/smi_canonicalise_018.diff tests/outputs/smi_canonicalise_019.diff tests/outputs/smi_canonicalise_020.diff tests/outputs/smi_canonicalise_021.diff tests/outputs/smi_canonicalise_022.diff tests/outputs/smi_canonicalise_023.diff tests/outputs/smi_canonicalise_024.diff tests/outputs/smi_canonicalise_025.diff tests/outputs/smi_canonicalise_026.diff tests/outputs/smi_canonicalise_027.diff tests/outputs/smi_canonicalise_028.diff tests/outputs/smi_canonicalise_029.diff tests/outputs/smi_canonicalise_030.diff tests/outputs/smi_canonicalise_031.diff tests/outputs/smi_canonicalise_032.diff tests/outputs/smi_canonicalise_033.diff tests/outputs/smi_chemical_formula_001.diff tests/outputs/smi_chemical_formula_002.diff tests/outputs/smi_isomorphism_001.diff tests/outputs/smi_isomorphism_002.diff tests/outputs/smi_isomorphism_003.diff tests/outputs/smi_isomorphism_004.diff tests/outputs/smi_isomorphism_005.diff tests/outputs/smi_isomorphism_006.diff tests/outputs/smi_isomorphism_007.diff tests/outputs/smi_isomorphism_008.diff tests/outputs/smi_isomorphism_009.diff tests/outputs/smi_isomorphism_010.diff tests/outputs/smi_isomorphism_011.diff tests/outputs/smi_isomorphism_012.diff tests/outputs/smi_isomorphism_013.diff tests/outputs/smi_isomorphism_014.diff tests/outputs/smi_isomorphism_015.diff tests/outputs/smi_isomorphism_016.diff tests/outputs/smi_isomorphism_017.diff tests/outputs/smi_isomorphism_018.diff tests/outputs/smi_isomorphism_019.diff tests/outputs/smi_isomorphism_020.diff tests/outputs/smi_isomorphism_021.diff tests/outputs/smi_isomorphism_022.diff tests/outputs/smi_isomorphism_023.diff tests/outputs/smi_isomorphism_024.diff tests/outputs/smi_isomorphism_025.diff tests/outputs/smi_isomorphism_026.diff tests/outputs/smi_isomorphism_027.diff tests/outputs/smi_isomorphism_028.diff tests/outputs/smi_isomorphism_029.diff tests/outputs/smi_isomorphism_030.diff tests/outputs/smi_isomorphism_031.diff tests/outputs/smi_isomorphism_032.diff tests/outputs/smi_isomorphism_033.diff tests/outputs/smi_isomorphism_034.diff tests/outputs/smi_isomorphism_035.diff tests/outputs/smi_isomorphism_036.diff tests/outputs/smi_parse_001.diff tests/outputs/smi_parse_002.diff tests/outputs/smi_parse_003.diff
rm -f version.h
rm -f src/lib/perl5/COD/ToolsVersion.pm scripts/cod-tools-version
rm -f scripts/.cod-tools-version.d
rm -f tests/outputs/junit/net/crystallography/vector/space/ChangeOfBasisTest.log tests/outputs/junit/net/crystallography/helpers/cdk/OrthogonaliseAtomCoordinatesTest.log
rm -f src/Version.java
rm -f classes/Version.class
rm -f classes/net/crystallography/vector/space/ChangeOfBasis.class classes/net/crystallography/helpers/cdk/OrthogonaliseAtomCoordinates.class classes/CDKCif2SdfHelp.class classes/CDKCif2SmilesHelp.class classes/CDKCif2XyzHelp.class classes/CDKDepictHelp.class classes/CDKRechargeHelp.class classes/CDKSdf2InChIHelp.class classes/CDKSdf2SmilesHelp.class classes/EPSOutputOption.class classes/OutputOption.class classes/PDFOutputOption.class classes/SVGOutputOption.class classes/VersionOption.class classes/cdkcif2sdf.class classes/cdkcif2smiles.class classes/cdkcif2xyz.class classes/cdkdepict.class classes/cdkrecharge.class classes/cdksdf2inchi.class classes/cdksdf2smiles.class
rm -f MANIFEST.txt
[... snipped ...]
< 6.87778 8.95715 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 6.47633 10.1964 m
< 6.27560 10.8161 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 5.87414 12.0553 m
< 5.67342 12.6750 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 5.27196 13.9142 m
< 5.07124 14.5339 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 20.8192 1.96200 m
---
> 2.00321 15.5940 m
1135,1207c979
< 18.8556 4.55400 m
< 18.2010 4.55400 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 16.8919 4.55400 m
< 16.2374 4.55400 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 14.9283 4.55400 m
< 14.2738 4.55400 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 12.9647 4.55400 m
< 12.3101 4.55400 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 11.0010 4.55400 m
< 10.3465 4.55400 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 9.03739 4.55400 m
< 8.38284 4.55400 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 25.2352 15.5940 m
---
> 6.41921 1.96200 m
1219,1280c991,992
< 22.1672 14.5339 m
< 21.9665 13.9142 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 21.5650 12.6750 m
< 21.3643 12.0553 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 20.9628 10.8161 m
< 20.7621 10.1964 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 20.3606 8.95715 m
< 20.1599 8.33752 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 19.7585 7.09825 m
< 19.5577 6.47861 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 19.1563 5.23934 m
< 18.9555 4.61970 l
---
> 20.8192 1.96200 m
> 25.2352 15.5940 l
1298,1369d1009
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 13.6674 20.8849 m
< 14.1954 20.4965 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 15.2514 19.7198 m
< 15.7794 19.3314 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 16.8354 18.5547 m
< 17.3634 18.1664 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 18.4194 17.3896 m
< 18.9474 17.0013 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 20.0034 16.2245 m
< 20.5314 15.8362 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
< .594828 w
< 1 J
< 1 j
< .266667 .266667 .266667 RG
< newpath
< 21.5874 15.0594 m
< 22.1154 14.6711 l
< S
< 1.00000 w
< 2 J
< 0 j
< 0.00000 0.00000 0.00000 RG
1384a1025,1037
> 0.00000 0.00000 0.00000 RG
> .266667 .266667 .266667 RG
> .594828 w
> 1 J
> 1 j
> newpath
> 21.5000 12.0000 m
> 21.5000 16.1421 18.1421 19.5000 14.0000 19.5000 c
> 9.85786 19.5000 6.50000 16.1421 6.50000 12.0000 c
> 6.50000 7.85786 9.85786 4.50000 14.0000 4.50000 c
> 18.1421 4.50000 21.5000 7.85786 21.5000 12.0000 c
> h
> S
tests/cases/cdkrecharge_001.opt: OK
tests/cases/cdkrecharge_002.sh: FAILED:
967,968c967,968
< 99.1719 10.6899 m
< 89.2941 4.98697 l
---
> 99.4600 10.5237 m
> 89.2941 4.65439 l
1003,1004c1003,1004
< 89.2839 27.8164 m
< 99.1683 22.1055 l
---
> 89.2840 28.1490 m
> 99.4562 22.2717 l
1039,1040c1039,1040
< 79.4098 10.6979 m
< 79.4061 22.1135 l
---
> 79.1218 10.5317 m
> 79.1181 22.2797 l
tests/cases/cdkrecharge_003.opt: OK
tests/cases/cdkrecharge_004.opt: OK
tests/cases/cdkrecharge_005.opt: OK
tests/cases/cdkrecharge_006.inp: OK
tests/cases/cdkrecharge_007.opt: OK
tests/cases/cdkrecharge_008.inp: OK
tests/cases/cdkrecharge_009.opt: OK
tests/cases/cdkrecharge_010.opt: OK
tests/cases/cdkrecharge_011.opt: OK
tests/cases/cdkrecharge_012.inp: OK
tests/cases/cdkrecharge_013.inp: OK
tests/cases/cdkrecharge_014.inp: OK
tests/cases/cdkrecharge_015.inp: OK
tests/cases/cdkrecharge_016.sh: OK
tests/cases/cdkrecharge_017.sh: OK
tests/cases/cdkrecharge_018.inp: OK
tests/cases/cdkrecharge_019.inp: OK
tests/cases/cdkrecharge_020.inp: OK
tests/cases/cdksdf2inchi_001.opt: OK
tests/cases/cdksdf2inchi_002.inp: OK
tests/cases/cdksdf2inchi_003.inp: OK
tests/cases/cdksdf2inchi_004.sh: OK
tests/cases/cdksdf2inchi_005.sh: OK
tests/cases/cdksdf2inchi_006.inp: OK
tests/cases/cdksdf2smiles_001.opt: OK
tests/cases/cdksdf2smiles_002.inp: OK
tests/cases/cdksdf2smiles_003.inp: OK
tests/cases/cdksdf2smiles_004.inp: OK
tests/cases/cdksdf2smiles_005.inp: OK
tests/cases/cdksdf2smiles_006.inp: FAILED:
1c1
< C1=CC=C(C(C(=C(C(=C(C(C2=CC=CC=C2)=CC)C)C=3C=CC=CC3)C=4C=CC=CC4)C)=CC)C=C1 1502405
---
> C1=CC=C(/C(/C(=C(/C(=C(/C(/C2=CC=CC=C2)=C/C)\C)/C=3C=CC=CC3)\C=4C=CC=CC4)/C)=C\C)C=C1 1502405
tests/cases/cdksdf2smiles_007.inp: OK
tests/cases/cdksdf2smiles_008.inp: OK
tests/cases/cdksdf2smiles_009.inp: OK
tests/cases/cdksdf2smiles_010.inp: FAILED:
1c1
< C1=CC=C(C(C(=C(C(=C(C(C2=CC=CC=C2)=CC)C)C=3C=CC=CC3)C=4C=CC=CC4)C)=CC)C=C1 1502405
---
> c1ccc(/C(/C(=C(/C(=C(/C(/c2ccccc2)=C/C)\C)/c3ccccc3)\c4ccccc4)/C)=C\C)cc1 1502405
tests/cases/cml-to-smi_001.inp: OK
tests/cases/cml-to-smi_002.inp: FAILED:
1c1
< c1ccc(C(C(=C(C(=C(C(c2ccccc2)=CC)C)c3ccccc3)c4ccccc4)C)=CC)cc1 1502405
---
> c1ccc(/C(/C(=C(/C(=C(/C(/c2ccccc2)=C/C)\C)/c3ccccc3)\c4ccccc4)/C)=C\C)cc1 1502405
tests/cases/cml-to-smi_003.inp: OK
tests/cases/cml-to-smi_004.inp: OK
tests/cases/cml-to-smi_005.inp: OK
tests/cases/cml-to-smi_006.inp: OK
tests/cases/cml-to-smi_007.inp: OK
tests/cases/cml-to-smi_008.inp: OK
tests/cases/cml-to-smi_009.inp: OK
tests/cases/opsin_001.sh: OK
tests/cases/sdf-to-smi_001.inp: OK
tests/cases/sdf-to-smi_002.inp: OK
tests/cases/sdf-to-smi_003.inp: OK
tests/cases/sdf-to-smi_004.inp: FAILED:
1c1,5
< C1=CC=CC=C1
---
> Use of uninitialized value $SMILES in substitution (s///) at <script_name> line <line_no>.
> Use of uninitialized value $SMILES in substitution (s///) at <script_name> line <line_no>.
> Use of uninitialized value $SMILES in substitution (s///) at <script_name> line <line_no>.
> undef
> undef
3d6
< C1=CC=CC2=CC=C3C4=CC=C5C=CC=CC5=C4C=CC3=C21
tests/cases/sdf-to-smi_005.inp: OK
tests/cases/sdf-to-smi_006.inp: OK
tests/cases/sdf-to-smi_007.inp: OK
tests/cases/sdf-to-smi_008.inp: OK
tests/cases/sdf-to-smi_009.inp: OK
tests/cases/sdf-to-smi_010.inp: OK
tests/cases/sdf-to-smi_011.inp: OK
tests/cases/sdf-to-smi_012.inp: OK
tests/cases/sdf-to-smi_013.inp: OK
tests/cases/sdf-to-smi_014.inp: OK
tests/cases/sdf-to-smi_015.inp: OK
tests/cases/sdf-to-smi_016.inp: OK
tests/cases/sdf-to-smi_017.inp: OK
tests/cases/sdf-to-smi_018.inp: OK
tests/cases/sdf-to-smi_019.inp: OK
tests/cases/sdf-to-smi_020.inp: OK
tests/cases/sdf-to-smi_021.inp: OK
tests/cases/sdf-to-smi_022.inp: OK
tests/cases/sdf-to-smi_023.inp: OK
tests/cases/sdf-to-smi_024.inp: OK
tests/cases/sdf-to-smi_025.inp: OK
tests/cases/sdf-to-smi_026.inp: OK
tests/cases/sdf-to-smi_027.inp: OK
tests/cases/sdf-to-smi_028.inp: OK
tests/cases/smi_canonicalise_001.inp: OK
tests/cases/smi_canonicalise_002.inp: OK
tests/cases/smi_canonicalise_003.inp: OK
tests/cases/smi_canonicalise_004.inp: OK
tests/cases/smi_canonicalise_005.inp: OK
tests/cases/smi_canonicalise_006.inp: OK
tests/cases/smi_canonicalise_007.inp: OK
tests/cases/smi_canonicalise_008.inp: OK
OK
tests/cases/smi_canonicalise_009.inp: tests/cases/smi_canonicalise_010.inp: OK
tests/cases/smi_canonicalise_011.inp: OK
tests/cases/smi_canonicalise_012.inp: OK
tests/cases/smi_canonicalise_013.inp: OK
tests/cases/smi_canonicalise_014.inp: OK
tests/cases/smi_canonicalise_015.inp: OK
OK
tests/cases/smi_canonicalise_016.inp: tests/cases/smi_canonicalise_017.inp: OK
tests/cases/smi_canonicalise_018.inp: OK
tests/cases/smi_canonicalise_019.inp: OK
tests/cases/smi_canonicalise_020.inp: OK
tests/cases/smi_canonicalise_021.inp: OK
tests/cases/smi_canonicalise_022.inp: OK
tests/cases/smi_canonicalise_023.inp: OK
tests/cases/smi_canonicalise_024.inp: OK
tests/cases/smi_canonicalise_025.inp: OK
tests/cases/smi_canonicalise_026.inp: OK
tests/cases/smi_canonicalise_027.inp: OK
tests/cases/smi_canonicalise_028.inp: OK
tests/cases/smi_canonicalise_029.inp: OK
tests/cases/smi_canonicalise_030.inp: OK
tests/cases/smi_canonicalise_031.inp: OK
tests/cases/smi_canonicalise_032.inp: OK
tests/cases/smi_canonicalise_033.inp: OK
tests/cases/smi_chemical_formula_001.inp: OK
tests/cases/smi_chemical_formula_002.inp: OK
tests/cases/smi_isomorphism_001.sh: OK
tests/cases/smi_isomorphism_002.sh: OK
tests/cases/smi_isomorphism_003.sh: OK
tests/cases/smi_isomorphism_004.sh: OK
tests/cases/smi_isomorphism_005.sh: OK
tests/cases/smi_isomorphism_006.sh: OK
tests/cases/smi_isomorphism_007.sh: OK
tests/cases/smi_isomorphism_008.sh: OK
tests/cases/smi_isomorphism_009.sh: OK
tests/cases/smi_isomorphism_010.sh: OK
tests/cases/smi_isomorphism_011.sh: OK
tests/cases/smi_isomorphism_012.sh: OK
tests/cases/smi_isomorphism_013.sh: OK
tests/cases/smi_isomorphism_014.sh: OK
tests/cases/smi_isomorphism_015.sh: OK
tests/cases/smi_isomorphism_016.sh: OK
tests/cases/smi_isomorphism_017.sh: OK
tests/cases/smi_isomorphism_018.sh: OK
tests/cases/smi_isomorphism_019.sh: OK
tests/cases/smi_isomorphism_020.sh: OK
tests/cases/smi_isomorphism_021.sh: OK
tests/cases/smi_isomorphism_022.sh: OK
tests/cases/smi_isomorphism_023.sh: OK
tests/cases/smi_isomorphism_024.sh: OK
tests/cases/smi_isomorphism_025.sh: OK
tests/cases/smi_isomorphism_026.sh: OK
tests/cases/smi_isomorphism_027.sh: OK
tests/cases/smi_isomorphism_028.sh: OK
tests/cases/smi_isomorphism_029.sh: OK
tests/cases/smi_isomorphism_030.sh: OK
tests/cases/smi_isomorphism_031.sh: OK
tests/cases/smi_isomorphism_032.sh: OK
tests/cases/smi_isomorphism_033.sh: OK
tests/cases/smi_isomorphism_034.sh: OK
tests/cases/smi_isomorphism_035.sh: OK
tests/cases/smi_isomorphism_036.sh: OK
tests/cases/smi_parse_001.inp: OK
tests/cases/smi_parse_002.inp: OK
tests/cases/smi_parse_003.sh: OK
net.crystallography.vector.space.ChangeOfBasisTest: OK
net.crystallography.helpers.cdk.OrthogonaliseAtomCoordinatesTest: OK
OK
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
cat debian/failing-tests | xargs rm
find tests/outputs -name '*.diff' -a -size +0 | xargs --no-run-if-empty -i echo FAILED: {}
FAILED: tests/outputs/opsin_001.diff
FAILED: tests/outputs/cdkdepict_003.diff
FAILED: tests/outputs/cdkdepict_002.diff
find tests/outputs -name '*.diff' -a -size +0 | xargs --no-run-if-empty false # Detect test failures
make[1]: *** [debian/rules:16: override_dh_auto_test] Error 123
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:6: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202501/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:smiles-scripts, so that this is still
visible in the BTS web page for this package.
Thanks.
More information about the Debichem-devel
mailing list