[Debichem-devel] Bug#1118311: mdtraj: FTBFS: sphinx.errors.ExtensionError: Could not import extension nbsphinx_link (exception: No module named 'docutils.utils.error_reporting')

Sat Oct 18 00:08:50 BST 2025

Package: src:mdtraj
Version: 1.11.0-1
Severity: serious
Tags: ftbfs forky sid

Dear maintainer:

During a rebuild of all packages in unstable, this package failed to build.

Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:

https://people.debian.org/~sanvila/build-logs/202510/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:mdtraj, so that this is still
visible in the BTS web page for this package.

Thanks.

--------------------------------------------------------------------------------
[...]
 debian/rules clean
dh clean --with sphinxdoc --buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
	pybuild --clean -i python{version} -p 3.13
I: pybuild base:311: python3.13 setup.py clean 
Using built-in specs.
COLLECT_GCC=/usr/bin/x86_64-linux-gnu-gcc
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-linux-gnu/15/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Debi [too-long-redacted] n --enable-link-serialization=3
Thread model: posix
Supported LTO compression algorithms: zlib zstd
gcc version 15.2.0 (Debian 15.2.0-4) 

[... snipped ...]

creating /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/prefix.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/constants.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/basedimension.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/unit.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/unit_operators.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit
creating /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/prefix.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/unit.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/unit_definitions.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/basedimension.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/unit_operators.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/mymatrix.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/constants.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/unit_math.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/baseunit.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/__init__.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/standard_dimensions.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/quantity.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/doctests.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/standard_dimensions.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/baseunit.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/mymatrix.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/doctests.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/unit_math.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/unit_definitions.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/quantity.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/contextmanagers.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unitcell.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/delay_import.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/io.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_version.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_rmsd.cpython-313-x86_64-linux-gnu.so -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj
creating /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/docstrings.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/testing.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing
creating /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/__pycache__/docscrape.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/__pycache__/__init__.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/__pycache__/testing.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/__pycache__/docstrings.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/docscrape.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing
creating /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/mdinspect.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts
creating /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/__pycache__/mdconvert.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/__pycache__/__init__.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/__pycache__/mdinspect.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/mdconvert.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts
creating /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr
creating /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/__pycache__/__init__.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/__pycache__/scalar_couplings.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/__pycache__/shift_wrappers.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/scalar_couplings.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/shift_wrappers.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr
creating /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/selection.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core
creating /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/residue_names.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/selection.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/element.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/__init__.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/trajectory.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/topology.cpython-313.pyc -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__
creating /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/lib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/lib/theobald_rmsd.h -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/lib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/lib/center.h -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/lib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/lib/libtheobald.a -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/lib
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/trajectory.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/residue_names.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/topology.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/element.py -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_lprmsd.cpython-313-x86_64-linux-gnu.so -> /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/__init__.py to __init__.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__init__.py to __init__.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/sasa.py to sasa.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/dihedral.py to dihedral.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/order.py to order.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/distance.py to distance.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/shape.py to shape.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/hbond.py to hbond.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/rg.py to rg.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/thermodynamic_properties.py to thermodynamic_properties.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/contact.py to contact.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/internal.py to internal.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/angle.py to angle.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/dssp.py to dssp.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/alignment.py to alignment.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/rdf.py to rdf.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/pi_stacking.py to pi_stacking.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__init__.py to __init__.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/xtcreporter.py to xtcreporter.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/dcdreporter.py to dcdreporter.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/basereporter.py to basereporter.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/hdf5reporter.py to hdf5reporter.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/netcdfreporter.py to netcdfreporter.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/netcdf.py to netcdf.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__init__.py to __init__.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/gsd.py to gsd.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/amberrst.py to amberrst.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/openmmxml.py to openmmxml.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/registry.py to registry.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/lammpstrj.py to lammpstrj.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/prmtop.py to prmtop.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/gro.py to gro.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/mdcrd.py to mdcrd.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/arc.py to arc.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/xyzfile.py to xyzfile.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/mol2.py to mol2.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/lh5.py to lh5.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/__init__.py to __init__.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/pdbstructure.py to pdbstructure.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/pdbfile.py to pdbfile.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/hdf5.py to hdf5.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/hoomdxml.py to hoomdxml.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/__init__.py to __init__.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/pdbx.py to pdbx.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/PdbxContainers.py to PdbxContainers.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/PdbxReader.py to PdbxReader.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/pdbxfile.py to pdbxfile.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/psf.py to psf.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__init__.py to __init__.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/rotation.py to rotation.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/zipped.py to zipped.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/singleton.py to singleton.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/validation.py to validation.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__init__.py to __init__.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/prefix.py to prefix.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/constants.py to constants.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/basedimension.py to basedimension.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/unit.py to unit.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/unit_operators.py to unit_operators.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/standard_dimensions.py to standard_dimensions.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/baseunit.py to baseunit.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/mymatrix.py to mymatrix.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/doctests.py to doctests.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/unit_math.py to unit_math.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/unit_definitions.py to unit_definitions.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/quantity.py to quantity.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/contextmanagers.py to contextmanagers.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unitcell.py to unitcell.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/delay_import.py to delay_import.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/io.py to io.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/_version.py to _version.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__init__.py to __init__.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/docstrings.py to docstrings.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/testing.py to testing.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/docscrape.py to docscrape.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/mdinspect.py to mdinspect.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/__init__.py to __init__.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/mdconvert.py to mdconvert.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__init__.py to __init__.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/scalar_couplings.py to scalar_couplings.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/shift_wrappers.py to shift_wrappers.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__init__.py to __init__.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/selection.py to selection.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/trajectory.py to trajectory.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/residue_names.py to residue_names.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/topology.py to topology.cpython-313.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/element.py to element.cpython-313.pyc
running install_egg_info
running egg_info
creating mdtraj.egg-info
writing mdtraj.egg-info/PKG-INFO
writing dependency_links to mdtraj.egg-info/dependency_links.txt
writing entry points to mdtraj.egg-info/entry_points.txt
writing requirements to mdtraj.egg-info/requires.txt
writing top-level names to mdtraj.egg-info/top_level.txt
writing manifest file 'mdtraj.egg-info/SOURCES.txt'
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
reading manifest file 'mdtraj.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
no previously-included directories found matching '__pycache__'
no previously-included directories found matching '*.pyc'
adding license file 'LICENSE'
writing manifest file 'mdtraj.egg-info/SOURCES.txt'
Copying mdtraj.egg-info to /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj-1.11.0.egg-info
Skipping SOURCES.txt
running install_scripts
Installing mdconvert-mdtraj script to /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/bin
Installing mdinspect script to /<<PKGBUILDDIR>>/debian/python3-mdtraj/usr/bin
   debian/rules execute_after_dh_auto_install-indep
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cp -a /<<PKGBUILDDIR>>/examples /<<PKGBUILDDIR>>/examples.orig
mkdir -p /<<PKGBUILDDIR>>/build/html/examples/iterload
ln -s /<<PKGBUILDDIR>>/examples/data /<<PKGBUILDDIR>>/build/html/examples/iterload/data
sed "s|http://www.rcsb.org/pdb/files|/<<PKGBUILDDIR>>/debian/external|g" -i /<<PKGBUILDDIR>>/examples/*.ipynb
PYTHONPATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mdtraj/build \
    MPLCONFIGDIR=/<<PKGBUILDDIR>>/build/matplotlib \
	make -C docs BUILDDIR=/<<PKGBUILDDIR>>/build  html
make[2]: Entering directory '/<<PKGBUILDDIR>>/docs'
sphinx-build -b html -d /<<PKGBUILDDIR>>/build/doctrees   . /<<PKGBUILDDIR>>/build/html
Running Sphinx v8.2.3
loading translations [en]... done

Extension error!

Versions
========

* Platform:         linux; (Linux-6.12.48+deb13-cloud-amd64-x86_64-with-glibc2.41)
* Python version:   3.13.9 (CPython)
* Sphinx version:   8.2.3
* Docutils version: 0.22.2
* Jinja2 version:   3.1.6
* Pygments version: 2.18.0

Last Messages
=============

None.

Loaded Extensions
=================

None.

Traceback
=========

      File "/usr/lib/python3/dist-packages/sphinx/registry.py", line 544, in load_extension
        raise ExtensionError(
            __('Could not import extension %s') % extname, err
        ) from err
    sphinx.errors.ExtensionError: Could not import extension nbsphinx_link (exception: No module named 'docutils.utils.error_reporting')

The full traceback has been saved in:
/tmp/sphinx-err-54wbhr8n.log

To report this error to the developers, please open an issue at <https://github.com/sphinx-doc/sphinx/issues/>. Thanks!
Please also report this if it was a user error, so that a better error message can be provided next time.
make[2]: *** [Makefile:53: html] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/docs'
make[1]: *** [debian/rules:42: execute_after_dh_auto_install-indep] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:13: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------