[Debichem-devel] Bug#1133662: votca: ftbfs with GCC-16

[Emanuele Rocca]

Package: src:votca
Version: 2025.1-2
Severity: important
Tags: sid forky ftbfs
User: debian-gcc at lists.debian.org
Usertags: ftbfs-gcc-16

Hi,

votca fails to build in a test rebuild on at least amd64 and arm64 with
gcc-16/g++-16, but builds properly with gcc-15/g++-15. The severity of this
report will be raised before the forky release.

The full build log can be found at:
https://people.debian.org/~ema/gcc-16-rebuilds/output-1/votca_arm64.build.xz

The last lines of the build log are at the end of this report.

To build with GCC 16, either set CC=gcc-16 CXX=g++-16 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.

  apt-get -t=experimental install g++ 

Common build failures include unused (but set) variables, array subscripts
partly outside array bounds, and new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-16/porting_to.html

Please only close this issue after double-checking that the package can be
built correctly with GCC 16.

Please do not reassign this bug to another package. If a fix in another package
is required, then file a bug for the other package (or clone), and mark this
bug as blocked by the bug in the other package.

[...]


cd /build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/csg/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_bead.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/votca-2025.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/part_dist.dir/link.d CMakeFiles/part_dist.dir/part_dist/part_dist.cc.o -o part_dist/csg_part_dist  -Wl,-rpath,/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/csg/src/libcsg:/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/tools/src/libtools: ../libcsg/libvotca_csg.so.2025 ../../../tools/src/libtools/libvotca_tools.so.2025 /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.90.0 /usr/lib/aarch64-linux-gnu/libboost_container.so.1.90.0 /usr/lib/gcc/aarch64-linux-gnu/16/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu'
[ 64%] Built target part_dist
[ 64%] Linking CXX executable partial_rdf/csg_partial_rdf
cd /build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/csg/src/csgapps && /usr/bin/cmake -E cmake_link_script CMakeFiles/partial_rdf.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/votca-2025.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/unit_test_bead.dir/link.d CMakeFiles/unit_test_bead.dir/test_bead.cc.o -o unit_test_bead  -Wl,-rpath,/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/csg/src/libcsg:/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/tools/src/libtools ../libcsg/libvotca_csg.so.2025 /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so.1.90.0 ../../../tools/src/libtools/libvotca_tools.so.2025 /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.90.0 /usr/lib/aarch64-linux-gnu/libboost_container.so.1.90.0 /usr/lib/gcc/aarch64-linux-gnu/16/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu'
[ 64%] Built target unit_test_bead
[ 64%] Linking CXX executable unit_test_lammpsdumpreaderwriter
cd /build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/csg/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_lammpsdumpreaderwriter.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/votca-2025.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/partial_rdf.dir/link.d CMakeFiles/partial_rdf.dir/partial_rdf/partial_rdf.cc.o CMakeFiles/partial_rdf.dir/partial_rdf/rdf_calculator.cc.o -o partial_rdf/csg_partial_rdf  -Wl,-rpath,/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/csg/src/libcsg:/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/tools/src/libtools: ../libcsg/libvotca_csg.so.2025 ../../../tools/src/libtools/libvotca_tools.so.2025 /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.90.0 /usr/lib/aarch64-linux-gnu/libboost_container.so.1.90.0 /usr/lib/gcc/aarch64-linux-gnu/16/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu'
[ 64%] Built target partial_rdf
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/votca-2025.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/unit_test_lammpsdumpreaderwriter.dir/link.d CMakeFiles/unit_test_lammpsdumpreaderwriter.dir/test_lammpsdumpreaderwriter.cc.o -o unit_test_lammpsdumpreaderwriter  -Wl,-rpath,/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/csg/src/libcsg:/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/tools/src/libtools ../libcsg/libvotca_csg.so.2025 /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so.1.90.0 ../../../tools/src/libtools/libvotca_tools.so.2025 /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.90.0 /usr/lib/aarch64-linux-gnu/libboost_container.so.1.90.0 /usr/lib/gcc/aarch64-linux-gnu/16/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu'
[ 64%] Built target unit_test_lammpsdumpreaderwriter
[ 64%] Linking CXX executable orientcorr/csg_orientcorr
cd /build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/csg/src/csgapps && /usr/bin/cmake -E cmake_link_script CMakeFiles/orientcorr.dir/link.txt --verbose=1
[ 64%] Linking CXX executable unit_test_interaction
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/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/votca-2025.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/orientcorr.dir/link.d CMakeFiles/orientcorr.dir/orientcorr/orientcorr.cc.o -o orientcorr/csg_orientcorr  -Wl,-rpath,/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/csg/src/libcsg:/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/tools/src/libtools: ../libcsg/libvotca_csg.so.2025 ../../../tools/src/libtools/libvotca_tools.so.2025 /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.90.0 /usr/lib/aarch64-linux-gnu/libboost_container.so.1.90.0 /usr/lib/gcc/aarch64-linux-gnu/16/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu'
[ 64%] Built target orientcorr
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/votca-2025.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/unit_test_interaction.dir/link.d CMakeFiles/unit_test_interaction.dir/test_interaction.cc.o -o unit_test_interaction  -Wl,-rpath,/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/csg/src/libcsg:/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/tools/src/libtools ../libcsg/libvotca_csg.so.2025 /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so.1.90.0 ../../../tools/src/libtools/libvotca_tools.so.2025 /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.90.0 /usr/lib/aarch64-linux-gnu/libboost_container.so.1.90.0 /usr/lib/gcc/aarch64-linux-gnu/16/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu'
[ 64%] Built target unit_test_interaction
[ 66%] Linking CXX executable unit_test_beadmotif_algorithms
cd /build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/csg/src/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unit_test_beadmotif_algorithms.dir/link.txt --verbose=1
[ 66%] Linking CXX executable csg_density
cd /build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/csg/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_density.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/votca-2025.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/unit_test_beadmotif_algorithms.dir/link.d CMakeFiles/unit_test_beadmotif_algorithms.dir/test_beadmotif_algorithms.cc.o -o unit_test_beadmotif_algorithms  -Wl,-rpath,/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/csg/src/libcsg:/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/tools/src/libtools ../libcsg/libvotca_csg.so.2025 /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so.1.90.0 ../../../tools/src/libtools/libvotca_tools.so.2025 /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.90.0 /usr/lib/aarch64-linux-gnu/libboost_container.so.1.90.0 /usr/lib/gcc/aarch64-linux-gnu/16/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu'
[ 66%] Built target unit_test_beadmotif_algorithms
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/votca-2025.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/csg_density.dir/link.d CMakeFiles/csg_density.dir/csg_density.cc.o -o csg_density  -Wl,-rpath,/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/csg/src/libcsg:/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/tools/src/libtools: ../libcsg/libvotca_csg.so.2025 ../../../tools/src/libtools/libvotca_tools.so.2025 /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.90.0 /usr/lib/aarch64-linux-gnu/libboost_container.so.1.90.0 /usr/lib/gcc/aarch64-linux-gnu/16/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu'
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[ 66%] Linking CXX executable csg_stat
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make[4]: Leaving directory '/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu'
[ 66%] Built target csg_stat
[ 66%] Linking CXX executable csg_reupdate
cd /build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/csg/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_reupdate.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/votca-2025.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/csg_reupdate.dir/link.d CMakeFiles/csg_reupdate.dir/csg_reupdate.cc.o -o csg_reupdate  -Wl,-rpath,/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/csg/src/libcsg:/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/tools/src/libtools: ../libcsg/libvotca_csg.so.2025 ../../../tools/src/libtools/libvotca_tools.so.2025 /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.90.0 /usr/lib/aarch64-linux-gnu/libboost_container.so.1.90.0 /usr/lib/gcc/aarch64-linux-gnu/16/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu'
[ 66%] Built target csg_reupdate
[ 66%] Linking CXX executable csg_imc_solve
cd /build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/csg/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_imc_solve.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/votca-2025.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wpedantic -Wshadow -Wconversion -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/csg_imc_solve.dir/link.d CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o -o csg_imc_solve  -Wl,-rpath,/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/csg/src/libcsg:/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/tools/src/libtools: ../libcsg/libvotca_csg.so.2025 ../../../tools/src/libtools/libvotca_tools.so.2025 /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.90.0 /usr/lib/aarch64-linux-gnu/libboost_container.so.1.90.0 /usr/lib/gcc/aarch64-linux-gnu/16/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a
make[4]: Leaving directory '/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu'
[ 66%] Built target csg_imc_solve
[ 66%] Linking CXX executable csg_fmatch
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make[4]: Leaving directory '/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu'
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[ 66%] Linking CXX shared library libvotca_xtp.so
cd /build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/xtp/src/libxtp && /usr/bin/cmake -E cmake_link_script CMakeFiles/votca_xtp.dir/link.txt --verbose=1
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/usr/lib/aarch64-linux-gnu/libint2.so.2.0.4 /usr/lib/aarch64-linux-gnu/libecpint.a /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.90.0 /usr/lib/aarch64-linux-gnu/libboost_timer.so.1.90.0 /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libboost_container.so.1.90.0 /usr/lib/gcc/aarch64-linux-gnu/16/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a -lm -lm /usr/lib/aarch64-linux-gnu/libFaddeeva.a /usr/lib/aarch64-linux-gnu/libpugixml.so
cd /build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu/xtp/src/libxtp && /usr/bin/cmake -E cmake_symlink_library libvotca_xtp.so.2025 libvotca_xtp.so.2025 libvotca_xtp.so
make[4]: Leaving directory '/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu'
[ 66%] Built target votca_xtp
make[3]: Leaving directory '/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu'
make[2]: *** [Makefile:149: all] Error 2
make[2]: Leaving directory '/build/reproducible-path/votca-2025.1/obj-aarch64-linux-gnu'
dh_auto_build: error: cd obj-aarch64-linux-gnu && make -j128 INSTALL="install --strip-program=true" VERBOSE=1 returned exit code 2
make[1]: *** [debian/rules:31: override_dh_auto_build-indep] Error 25
make[1]: Leaving directory '/build/reproducible-path/votca-2025.1'
make: *** [debian/rules:50: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2