[Debichem-devel] Bug#1149272: bagel: FTBFS with boost 1.92
Anton Gladky
gladk at debian.org
Tue Sep 29 05:32:45 BST 2026
Package: src:bagel
Version: 1.2.2-8
Severity: important
Tags: sid forky ftbfs
User: debian-devel at lists.debian.org
Usertags: boost1.92
Dear Maintainer,
Boost 1.92 will most likely be the default boost version in the
upcoming Debian 14 (forky) release.
bagel FTBFS with boost 1.92. Note that the FTBFS may not necessarily be
connected to boost - please check the build log for the actual cause.
Note: This ticket severity will be increased to RC bug when
boost-defaults is switched to 1.92.
If your package depends on versioned boost packages (e.g. libboost1.90-dev),
please switch to the unversioned (default) ones (e.g. libboost-dev), so the
package follows future boost transitions automatically.
Here is the most probably relevant part of the failing build log:
==================== build log ====================
make[5]: Entering directory '/build/reproducible-path/bagel-1.2.2/src/util/io'
/bin/bash ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -ffile-prefix-map=/build/reproducible-path/bagel-1.2.2=. -c -o moldenin.lo moldenin.cc
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -ffile-prefix-map=/build/reproducible-path/bagel-1.2.2=. -c moldenin.cc -o moldenin.o
In file included from ../../../btas/range.h:27,
from ../../../btas/defaults.h:15,
from ../../../btas/tensor.h:11,
from ../../../btas/generic/axpy_impl.h:8,
from ../../../btas/btas.h:8,
from ../../../src/util/math/btas_interface.h:38,
from ../../../src/util/math/vectorb.h:30,
from ../../../src/util/math/matrix_base.h:33,
from ../../../src/util/math/matrix.h:32,
from ../../../src/util/math/zmatrix.h:30,
from ../../../src/molecule/shell.h:29,
from ../../../src/molecule/atom.h:29,
from ../../../src/molecule/molecule.h:29,
from ../../../src/wfn/hcoreinfo.h:29,
from ../../../src/mat1e/hcore.h:29,
from ../../../src/wfn/reference.h:30,
from ../../../src/util/io/moldenio.h:31,
from ../../../src/util/io/moldenin.h:28,
from moldenin.cc:25:
../../../btas/util/functional.h:30:58: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
30 | struct first_of_pair< std::pair<T1,T2> > : public std::unary_function<const std::pair<T1,T2>&,const T1&> {
| ^~~~~~~~~~~~~~
In file included from /usr/include/c++/16/string:52,
from /usr/include/c++/16/bits/locale_classes.h:43,
from /usr/include/c++/16/bits/ios_base.h:43,
from /usr/include/c++/16/ios:46,
from /usr/include/c++/16/istream:42,
from /usr/include/c++/16/fstream:42,
from ../../../src/util/io/moldenio.h:28:
/usr/include/c++/16/bits/stl_function.h:120:12: note: declared here
120 | struct unary_function
| ^~~~~~~~~~~~~~
../../../btas/util/functional.h:37:59: warning: 'template<class _Arg, class _Result> struct std::unary_function' is deprecated [-Wdeprecated-declarations]
37 | struct second_of_pair< std::pair<T1,T2> > : public std::unary_function<const std::pair<T1,T2>&,const T2&> {
| ^~~~~~~~~~~~~~
/usr/include/c++/16/bits/stl_function.h:120:12: note: declared here
120 | struct unary_function
| ^~~~~~~~~~~~~~
In file included from ../../../btas/tensorview.h:15,
from ../../../btas/tensor.h:13:
../../../btas/tensorview_iterator.h:20:42: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
20 | class TensorViewIterator : public std::iterator<typename std::conditional<std::is_const<Storage>::value,
| ^~~~~~~~
In file included from /usr/include/c++/16/bits/stl_construct.h:61,
from /usr/include/c++/16/bits/char_traits.h:59,
from /usr/include/c++/16/ios:44:
/usr/include/c++/16/bits/stl_iterator_base_types.h:129:34: note: declared here
129 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
../../../btas/tensorview_iterator.h:33:20: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
33 | typedef std::iterator<typename std::conditional<std::is_const<Storage>::value,
| ^~~~~~~~
/usr/include/c++/16/bits/stl_iterator_base_types.h:129:34: note: declared here
129 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from ../../../src/molecule/atom.h:32:
../../../src/util/input/input.h:38:35: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
38 | class PTreeIterator : public std::iterator<std::bidirectional_iterator_tag, const std::shared_ptr<const PTree>> {
| ^~~~~~~~
/usr/include/c++/16/bits/stl_iterator_base_types.h:129:34: note: declared here
129 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from ../../../src/util/constants.h:30,
from ../../../src/ci/ciutil/cistring.h:31,
from ../../../src/ci/ciutil/citraits.h:29,
from ../../../src/ci/ciutil/ciblock.h:29,
from ../../../src/ci/ciutil/determinants_base.h:29,
from ../../../src/ci/fci/determinants.h:29,
from ../../../src/ci/fci/civec.h:33,
from ../../../src/ci/fci/dvec.h:29,
from ../../../src/wfn/reference.h:31:
/usr/include/c++/16/chrono: In function 'std::chrono::leap_second_info std::chrono::__detail::__get_leap_second_info(std::chrono::sys_seconds, bool)':
/usr/include/c++/16/chrono:3292:47: error: call of overloaded 'begin(const std::chrono::duration<long int>::rep [27])' is ambiguous
3292 | const seconds::rep* __first = std::begin(__leaps);
| ~~~~~~~~~~^~~~~~~~~
• there are 2 candidates
In file included from /usr/include/c++/16/string:56:
• candidate 1: 'constexpr _Tp* std::begin(_Tp (&)[_Nm]) [with _Tp = const long int; long unsigned int _Nm = 27]'
/usr/include/c++/16/bits/range_access.h:101:5:
101 | begin(_Tp (&__arr)[_Nm]) noexcept
| ^~~~~
In file included from ../../../btas/range.h:21:
• candidate 2: 'T* std::begin(T*) [with T = const long int]'
../../../btas/array_adaptor.h:168:6:
168 | T* begin(T* x) {
| ^~~~~
make[5]: *** [Makefile:413: moldenin.lo] Error 1
make[5]: Leaving directory '/build/reproducible-path/bagel-1.2.2/src/util/io'
make[4]: *** [Makefile:466: all-recursive] Error 1
make[4]: Leaving directory '/build/reproducible-path/bagel-1.2.2/src/util'
make[3]: *** [Makefile:618: all-recursive] Error 1
make[3]: Leaving directory '/build/reproducible-path/bagel-1.2.2/src'
make[2]: *** [Makefile:439: all-recursive] Error 1
make[2]: Leaving directory '/build/reproducible-path/bagel-1.2.2'
make[1]: *** [Makefile:371: all] Error 2
make[1]: Leaving directory '/build/reproducible-path/bagel-1.2.2'
dh_auto_build: error: make -j1 returned exit code 2
make: *** [debian/rules:12: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2
==================== end of build log =============
Thanks,
Anton Gladky
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