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<div class=Section1><pre style='mso-margin-top-alt:0cm;margin-right:12.0pt;
margin-bottom:0cm;margin-left:12.0pt;margin-bottom:.0001pt;line-height:120%'><font
size=2 color=black face="Courier New"><span lang=EN-GB style='font-size:10.0pt;
line-height:120%;color:black'>Package: pymol<o:p></o:p></span></font></pre><pre
style='mso-margin-top-alt:0cm;margin-right:12.0pt;margin-bottom:0cm;margin-left:
12.0pt;margin-bottom:.0001pt;line-height:120%'><font size=2 color=black
face="Courier New"><span lang=EN-GB style='font-size:10.0pt;line-height:120%;
color:black'>Version: 0.99rc6.</span></font><font color=black><span lang=EN-US
style='color:black'><o:p></o:p></span></font></pre>

<p class=MsoNormal><font size=2 face=Arial><span lang=EN-GB style='font-size:
10.0pt;font-family:Arial'>Fit command<o:p></o:p></span></font></p>

<p class=MsoNormal><font size=2 face=Arial><span lang=EN-GB style='font-size:
10.0pt;font-family:Arial'>PyMOL&gt;fit (/1MQ4//A/127-257/CA+N+C), (
/2BMC//B/127-257/CA+N+C)<o:p></o:p></span></font></p>

<p class=MsoNormal><font size=2 face=Arial><span lang=EN-GB style='font-size:
10.0pt;font-family:Arial'>ExecutiveRMS-Error: No atoms selected.<o:p></o:p></span></font></p>

<p class=MsoNormal><font size=2 face=Arial><span lang=EN-GB style='font-size:
10.0pt;font-family:Arial'><o:p>&nbsp;</o:p></span></font></p>

<p class=MsoNormal><font size=2 face=Arial><span lang=EN-GB style='font-size:
10.0pt;font-family:Arial'>&nbsp;is not working when the chain ID of the two PDB
structures (1MQ4.pdb and 2BMC.pdb) are not the same letter<o:p></o:p></span></font></p>

<p class=MsoNormal><font size=2 face=Arial><span lang=EN-GB style='font-size:
10.0pt;font-family:Arial'><o:p>&nbsp;</o:p></span></font></p>

<p class=MsoNormal><font size=2 face=Arial><span lang=EN-GB style='font-size:
10.0pt;font-family:Arial'>Every time try to overlay two molecule by fit command
&nbsp;the chain ID in one of the two structures have to chain manually before
executing the command <o:p></o:p></span></font></p>

<p class=MsoNormal><font size=2 face=Arial><span lang=EN-GB style='font-size:
10.0pt;font-family:Arial'>PyMOL&gt;fit&nbsp; (/1MQ4//A/128-257/CA+N+C), (
/2BMC//A/128-257/CA+N+C)<o:p></o:p></span></font></p>

<p class=MsoNormal><font size=2 face=Arial><span lang=EN-GB style='font-size:
10.0pt;font-family:Arial'>&nbsp;Executive: RMS =&nbsp;&nbsp;&nbsp; 1.148 (390
to 390 atoms)<o:p></o:p></span></font></p>

<p class=MsoNormal><font size=2 face=Arial><span lang=EN-GB style='font-size:
10.0pt;font-family:Arial'><o:p>&nbsp;</o:p></span></font></p>

<p class=MsoNormal><font size=2 face=Arial><span lang=EN-GB style='font-size:
10.0pt;font-family:Arial'>I am not sure if this is a bug or there is an
alternative <o:p></o:p></span></font></p>

<p class=MsoNormal><font size=2 face=Arial><span lang=EN-GB style='font-size:
10.0pt;font-family:Arial'>Thanks <o:p></o:p></span></font></p>

<p class=MsoNormal><font size=2 face=Arial><span lang=EN-GB style='font-size:
10.0pt;font-family:Arial'><o:p>&nbsp;</o:p></span></font></p>

<p class=MsoNormal><font size=2 face=Arial><span lang=EN-GB style='font-size:
10.0pt;font-family:Arial'>George <o:p></o:p></span></font></p>

<p class=MsoNormal><font size=2 face=Arial><span lang=EN-GB style='font-size:
10.0pt;font-family:Arial'><o:p>&nbsp;</o:p></span></font></p>

<p class=MsoNormal><font size=3 face="Times New Roman"><span lang=EN-GB
style='font-size:12.0pt'>&nbsp;-------------------------------------------------<br>
Assistant Professor of Biochemistry<br>
Head of Biochemistry<br>
<st1:PlaceName w:st="on">Veterinary</st1:PlaceName> <st1:PlaceType w:st="on">School</st1:PlaceType>,
<st1:place w:st="on"><st1:PlaceType w:st="on">University</st1:PlaceType> of <st1:PlaceName
 w:st="on">Thessaly</st1:PlaceName></st1:place><br>
<st1:address w:st="on"><st1:Street w:st="on">PO Box 199</st1:Street>, <st1:City
 w:st="on">Karditsa</st1:City> <st1:PostalCode w:st="on">43100</st1:PostalCode>,&nbsp;
 <st1:country-region w:st="on">Greece</st1:country-region></st1:address><br>
Tel: +30 24410 66081<br>
Mob: +30 69 342 643 75<br>
Fax: +30 24410 66041<br>
e-mail: </span><a href="mailto:gkontopidis@vet.uth.gr"
title="mailto:gkontopidis@vet.uth.gr"><span lang=EN-GB>gkontopidis@vet.uth.gr</span></a></font><span
lang=EN-GB><br>
web site:&nbsp;</span><a
href="http://www.vet.uth.gr/english/departments_biochemistry.html"
title="http://www.vet.uth.gr/english/departments_biochemistry.html"><span
lang=EN-GB>http://www.vet.uth.gr/english/departments_biochemistry.html</span></a>
<span lang=EN-GB><o:p></o:p></span></p>

<p class=MsoNormal><font size=3 face="Times New Roman"><span lang=EN-GB
style='font-size:11.5pt'>&nbsp;&nbsp;&nbsp;
----------------------------------------------------</span></font><font size=3><span
lang=EN-GB style='font-size:11.5pt'><o:p></o:p></span></font></p>

<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'><o:p>&nbsp;</o:p></span></font></p>

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