[Neurodebian-users] Ubuntu 10.10, csh or tcsh and FSL 4.1

[Michael Hanke]

On Thu, Jun 09, 2011 at 12:44:02PM -0400, Deryk S. Beal, Ph.D. wrote:
> Unfortunately I was working under the assumption that the trac-all
> command had to be used within a csh or tsch environment. As such, I
> never attempted to run the trac-all command from bash (or some other
> non-c alternative). At your suggestion I started the trac-all command
> in bash and it appears to be running without error.

I was hoping for this type of reply ;-)

> Although it may be a moot point, it seems that when running trac-all in
> csh/tcsh with the Neurodebain distro of FSL one must alter the routines
> called from "flirt" to "flirt.fsl." in order for them to be sourced
> correctly. However, as you pointed out there are good reasons not to operate
> within csh/tcsh and trac-all appears to be running without error under bash.

As we speak, we are working on a better integration of FSL and
Freesurfer on the NeuroDebian platform. It will be some time before that
will be out in the wild, but it is work in progress already...

> Thanks again for your timely support.

Your welcome!

Michael


-- 
Michael Hanke
http://mih.voxindeserto.de