[Neurodebian-users] debruijn malloc error

[Antti Korvenoja]

Dear Geoff and Yaroslav,

Thank you for your help. The Mac version does not produce any errors with these arguments. I hope the Debian version can be fixed since Debian is my preferred platform.

Antti

On 2 Jul 2013, at 18:17, Geoffrey K Aguirre wrote:

> Antti -- I can't speak to the troubles with the debruijn code in debian, but we do have a compiled version of the software available for Mac OS X
> 
> 	https://cfn.upenn.edu/aguirre/wiki/public:de_bruijn_software
> 
> Geoff
> 
> 
> On Jul 2, 2013, at 9:06 AM, Antti Korvenoja <antti.korvenoja at helsinki.fi> wrote:
> 
>> Dear developers,
>> 
>> I'm trying to run debruijn on jessie. Using a guide function leads to
>> output below.
>> 
>> debruijn 5 2 5 HRF neural.txt -eval 5000
>> 
>> Using a Hemodynamic Response Filter as a guide function.
>> The SOA used here is: 5000
>> 
>> 
>> 
>> Cycle found:
>> ------------
>> 0,2,4,1,1,4,3,2,0,4,4,0,1,2,1,0,3,4,2,2,3,3,1,3,0
>> ------------
>> Valid sequence 
>> 
>> debruijn: malloc.c:3616: _int_malloc: Assertion `(unsigned long)(size)
>>> = (unsigned long)(nb)' failed.
>> Aborted
>> 
>> debruijn 5 2 runs without error as well as e.g. debruijn 5 3 5 HRF
>> neural.txt -eval 5000.
>> 
>> Thank you for your help,
>> 
>> Antti
>> 
>> 
>> 
>> _______________________________________________
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>> Neurodebian-users at lists.alioth.debian.org
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> 
> 
> --
> 
> Geoffrey Karl Aguirre, M.D., Ph.D.
> https://cfn.upenn.edu/aguirre
> Associate Professor of Neurology
> Hospital of the University of Pennsylvania
> Philadelphia, PA
>