[Neurodebian-users] Condor and ANTs

[Michael Hanke]

Hey,

On Mon, Jan 13, 2014 at 3:02 PM, Arman Eshaghi <arman.eshaghi at gmail.com>wrote:

> Specifically my problem is with buildtemplateparallel in ANTs that
> benefits from a couple of grid engines including SGE, Apple XGrid, PBS but
> not condor. For some reason the above trick (qsub symbolic link to
> condor_qsub) does not work here, and I receive “condor_qsub ‘-n’ option not
> recognized’. From the error message it clearly appears something is passed
> to condor_qsub that it can not handle, even when imitating SGE qsub.
>
> Here is what I have done:
>
> 1. Checking buildtemplateparallel.sh script to figure out the problem. So
> far no success, it sounds non-trivial (to me).
> 2. Asking from ANTs mailing list, they suggested I make the script to work
> with condor on myself (see no. 1).
> 3. Getting back to SGE: not an option, I bragged about  condor a few weeks
> ago to IT admin, I’ll lose credibility.
>

4. Figure out what qsub -n does and try supporting it in condor_qsub

However, I have trouble figuring out what -n is supposed to do. Any hint?

Michael
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