[Neurodebian-users] fsl-5.0-complete package broken

[Alessandro Bellini]

Hello,
I'm trying some tutorial and I have some problems with FIRST. following the
instruction I type

analisi at analisi-linux1 ~/FSL/fsl_course_data1/seg_struc/first $
fsl5.0-run_first_all -i con0047_brain -b -s L_Hipp,L_Amyg \ -o con0047 -a
con0047_brain_to_std_sub.mat
15399
[1]+  Completato              fslview

and the I check the error log

analisi at analisi-linux1 ~/FSL/fsl_course_data1/seg_struc/first $ cat
con0047.logs/*.e*
/usr/share/fsl/5.0/bin/first: error while loading shared libraries:
libshapeModel.so: cannot open shared object file: No such file or directory
/usr/share/fsl/5.0/bin/first: error while loading shared libraries:
libshapeModel.so: cannot open shared object file: No such file or directory
/usr/share/fsl/5.0/bin/first: error while loading shared libraries:
libshapeModel.so: cannot open shared object file: No such file or directory
/usr/share/fsl/5.0/bin/first: error while loading shared libraries:
libshapeModel.so: cannot open shared object file: No such file or directory
/usr/share/fsl/5.0/bin/fslmerge: error while loading shared libraries:
libnewimage.so: cannot open shared object file: No such file or directory
/usr/share/fsl/5.0/bin/fslmerge: error while loading shared libraries:
libnewimage.so: cannot open shared object file: No such file or directory
/usr/share/fsl/5.0/bin/first_mult_bcorr: error while loading shared
libraries: libnewimage.so: cannot open shared object file: No such file or
directory
/usr/share/fsl/5.0/bin/fslmerge: error while loading shared libraries:
libnewimage.so: cannot open shared object file: No such file or directory
/usr/share/fsl/5.0/bin/fslmerge: error while loading shared libraries:
libnewimage.so: cannot open shared object file: No such file or directory
/usr/share/fsl/5.0/bin/first_mult_bcorr: error while loading shared
libraries: libnewimage.so: cannot open shared object file: No such file or
directory
analisi at analisi-linux1 ~/FSL/fsl_course_data1/seg_struc/first $

I had many time the same error "while loading shared libraries", but
usually the solution was to put the string fsl5.0- before the command (for
example fsl5.0-Bet instead of Bet). This time it's not working.

Thanks
Alessandro


2014-09-01 16:31 GMT+02:00 Yaroslav Halchenko <debian at onerussian.com>:

>
> On Mon, 01 Sep 2014, Alessandro Bellini wrote:
>
> >    So the newest version 5 of fsl is not available for my mint
> distribution?
>
> it is available... you should have just used 'wheezy' not 'jessie' in
> your /etc/apt/sources.list.d/neurodebian.sources.list (and then apt-get
> update)
>
> --
> Yaroslav O. Halchenko, Ph.D.
> http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org
> Research Scientist,            Psychological and Brain Sciences Dept.
> Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
> Phone: +1 (603) 646-9834                       Fax: +1 (603) 646-1419
> WWW:   http://www.linkedin.com/in/yarik
>
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