From mountoval at spar.ie Fri Dec 2 22:12:41 2016 From: mountoval at spar.ie (Titi) Date: Fri, 2 Dec 2016 22:12:41 -0000 Subject: [Neurodebian-users] Hello from Titi Message-ID: Hello, Good day,My name is Titi. I came across your profile while browsing and decided to contact you for friendship,i am one of the few that still believes in true love and friendship,in miracles and divine connections. You may not know me now but i will give you my pictures and profile as soon as you reply. Please use this address to do so (kambo4titi at gmail.com),and please i will be happy if you can attach your picture as you reply,thanks. From fwhitt at ua.edu Mon Dec 5 09:25:32 2016 From: fwhitt at ua.edu (Whitt, Fredrick) Date: Mon, 5 Dec 2016 09:25:32 +0000 Subject: [Neurodebian-users] =?iso-8859-1?q?Din_brevl=E5da_=E4r_n=E4stan_f?= =?iso-8859-1?q?ull=2E?= In-Reply-To: <1003DE8FE56DE34998C2A0922390695A01B966F990@EX10MBN02.ua-net.ua.edu> References: <1003DE8FE56DE34998C2A0922390695A01B966F990@EX10MBN02.ua-net.ua.edu> Message-ID: <1003DE8FE56DE34998C2A0922390695A01B9671E16@EX10MBN02.ua-net.ua.edu> ________________________________ From: Whitt, Fredrick Sent: Monday, December 05, 2016 3:07 AM To: Whitt, Fredrick Subject: Din brevl?da ?r n?stan full. Din brevl?da ?r n?stan full. 50MB 500MB Viktigt Meddelande: Outlook Uppdatera din server Meddelande fr?n Microsoft Outlook Web Upgrade vi uppdaterar alla ADMIN, fakulteten, student, och ANST?LLD PERSONAL KVOT brevl?da fr?n 500MB till 50GB. F?r att s?kerst?lla att din e-post ?r trygg och s?ker det viktiga ?r att du verifiera dina kontouppgifter att f?lja referens nedan: Obs: Kontrollera tillg?ng Detaljer h?lsningar Samantha Hughes7. Outlook serviceavdelning -------------- next part -------------- An HTML attachment was scrubbed... URL: From Peter.Parzer at med.uni-heidelberg.de Tue Dec 6 07:22:20 2016 From: Peter.Parzer at med.uni-heidelberg.de (Parzer, Peter) Date: Tue, 6 Dec 2016 07:22:20 +0000 Subject: [Neurodebian-users] FSL Feat on Ubuntu 16.04 creates huge report_log.html filled with zeros Message-ID: <8fe994d14e134fa4a1e15223d619a77c@EXC06.ads.krz.uni-heidelberg.de> Hi, But report for the neurodebian package: fsl-5.0-core, Version: 5.0.9-3~nd16.04+1 My system: Ubuntu 16.04.1 LTS amd64 with all current updates. When I try to run FEAT, the program is writing zeros (the byte 0, not the char "0") at a rate of about 100 MB per second into the file report_log.html until all disk space is filled up. It starts doing so at about 15 seconds after invocation. The problem occurred with different configurations of Feat (preprocessing, statistic, etc.). Here is the head of report_log.html until the start of the zeros: FSL

Progress Report / Log

Started at Fr 25. Nov 10:32:01 CET 2016

Feat main script


/bin/cp /dat/UHR/neu/auswertungen/rs/2001/feat.fsf design.fsf

/usr/share/fsl/5.0/bin/feat_model design

mkdir .files;cp /usr/share/fsl/5.0/doc/fsl.css .files;cp -r /usr/share/fsl/5.0/doc/images .files/images

/usr/share/fsl/5.0/bin/fsl_sub -T 10 -l logs -N feat0_init   /usr/share/fsl/5.0/bin/feat /dat/UHR/neu/auswertungen/rs/2001/rs.feat/design.fsf -D /dat/UHR/neu/auswertungen/rs/2001/rs.feat -I 1 -init
12050

/usr/share/fsl/5.0/bin/fsl_sub -T 360 -l logs -N feat2_pre -j 12050  /usr/share/fsl/5.0/bin/feat /dat/UHR/neu/auswertungen/rs/2001/rs.feat/design.fsf -D /dat/UHR/neu/auswertungen/rs/2001/rs.feat -I 1 -prestats
Initialisation

/usr/share/fsl/5.0/bin/fslmaths /dat/UHR/neu/auswertungen/rs/2001/2001_rs prefiltered_func_data -odt float
Total original volumes = 180

/usr/share/fsl/5.0/bin/fslroi prefiltered_func_data example_func 90 1
Preprocessing:Stage 1

/usr/share/fsl/5.0/bin/mainfeatreg -F 6.00 -d /dat/UHR/neu/auswertungen/rs/2001/rs.feat -l /dat/UHR/neu/auswertungen/rs/2001/rs.feat/logs/feat2_pre -R /dat/UHR/neu/auswertungen/rs/2001/rs.feat/report_unwarp.html -r /dat/UHR/neu/auswertungen/rs/2001/rs.feat/report_reg.html  -i /dat/UHR/neu/auswertungen/rs/2001/rs.feat/example_func.nii.gz  -n 10 -h /dat/UHR/neu/auswertungen/rs/2001/2001_T1_brain -w  BBR -x 90 -s /usr/share/fsl/data/standard/MNI152_T1_2mm_brain -y 12 -z 90
Option -F ( FEAT version parameter ) selected with  argument "6.00"
Option -d ( output directory ) selected with  argument "/dat/UHR/neu/auswertungen/rs/2001/rs.feat"
Option -l ( logfile )input with argument "/dat/UHR/neu/auswertungen/rs/2001/rs.feat/logs/feat2_pre"
Option -R ( html unwarping report ) selected with  argument "/dat/UHR/neu/auswertungen/rs/2001/rs.feat/report_unwarp.html"
Option -r ( html registration report ) selected with  argument "/dat/UHR/neu/auswertungen/rs/2001/rs.feat/report_reg.html"
Option -i ( main input ) input with argument "/dat/UHR/neu/auswertungen/rs/2001/rs.feat/example_func.nii.gz"
Option -n ( use nonlinear reg ) input with argument "10"
Option -h ( high-res structural image ) selected with  argument "/dat/UHR/neu/auswertungen/rs/2001/2001_T1_brain"
Option -w ( highres dof ) selected with  argument "BBR"
Option -x ( highres search ) selected with  argument "90"
Option -s ( standard image ) selected with  argument "/usr/share/fsl/data/standard/MNI152_T1_2mm_brain"
Option -y ( standard dof ) selected with  argument "12"
Option -z ( standard search ) selected with  argument "90"
Registration

/bin/mkdir -p /dat/UHR/neu/auswertungen/rs/2001/rs.feat/reg

Greetings
Peter