[Neurodebian-users] nibabel emits warning on Ubuntu 16.04

[paul mccarthy]

Hi Dimitri,

Unfortunately nibabel 2.3 won't work with indexed gzip <= 0.6.1.

Until indexed gzip gets updated for neurodebian, you do have the option of
installing indexed gzip via pypi. It will soon be on conda-forge too.

Cheers,

Paul

On 14 June 2018 at 11:34, Dimitri Papadopoulos Orfanos <
dimitri.papadopoulos at cea.fr> wrote:

> Hi,
>
> On Ubuntu 16.04, NeuroDebian's nibabel emits the following warning when
> starting fsleyes:
>
> /usr/lib/python2.7/dist-packages/nibabel/openers.py:29: UserWarning:
> indexed_gzip is present, but too old (>= 0.7.0 required): 0.6.1)
>   '(>= 0.7.0 required): {})'.format(version))
>
> Indeed Ubuntu 16.04 ships with python-indexed-gzip version
> 0.6.1-1~nd16.04+1. Should NeuroDebian package and ship a version of
> python-indexed-gzip >= 0.7.0? Current version is 0.8.4.
>
> I'm using python-nibabel version 2.3.0-1~nd16.04+1.
>
> Best wishes,
> Dimitri Papadopoulos
>
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