<html><head></head><body><div style="font-family: Verdana;font-size: 12.0px;"><div><meta content="text/html; charset=utf-8" http-equiv="content-type"/><span class="Apple-style-span" style="font-family: 'Times New Roman'; font-size: medium; "><pre style="white-space: pre-wrap; "><meta content="text/html; charset=utf-8" http-equiv="content-type"/><span class="Apple-style-span" style="font-family: 'Times New Roman'; white-space: normal; "><pre style="white-space: pre-wrap; ">> Ahhhhhhhhhh! I think you just solved Bertrams problem!! Replying in that
> thread.</pre></span>Well glad I could help...



> This looks all good. Could you post the output of
>
> condor_q -l 44.140
>
> so we can see what it is trying to run. From the cluster ID it seems
> that this is an actual TBBS analisys, not the FEEDS test, right? Getting
> some more details might shed some light.</pre><div>OK -></div><div><br/></div><div><div>stefan@gehirne:~$ condor_q -l 45.399</div><div><br/></div><div>-- Submitter: gehirne.fritz.box : <127.0.0.1:46801> : gehirne.fritz.box</div><div>BufferSize = 524288</div><div>NiceUser = false</div><div>CoreSize = 0</div><div>CumulativeSlotTime = 0</div><div>OnExitHold = false</div><div>GlobalJobId = "gehirne.fritz.box#45.399#1337110950"</div><div>RequestCpus = 1</div><div>Err = "tbss_logs/tbss_2_reg.e45.400"</div><div>BufferBlockSize = 32768</div><div>ImageSize = 125</div><div>CurrentTime = time()</div><div>WantCheckpoint = false</div><div>CommittedTime = 0</div><div>TargetType = "Machine"</div><div>WhenToTransferOutput = "ON_EXIT"</div><div>ServerTime = 1337110979</div><div>Cmd = "/bin/sh"</div><div>JobUniverse = 5</div><div>ExitBySignal = false</div><div>TransferIn = false</div><div>Iwd = "/home/stefan/studies/tbss_-n/FA"</div><div>NumRestarts = 0</div><div>CommittedSuspensionTime = 0</div><div>Owner = "stefan"</div><div>NumSystemHolds = 0</div><div>CumulativeSuspensionTime = 0</div><div>Environment = "PATH=/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games:/usr/lib/fsl/4.1 XDG_SESSION_COOKIE=98f228034f053963585a8d1100000008-1337108340.39690-977355352 LD_LIBRARY_PATH=/usr/lib/fsl/4.1 FSLTCLSH=/usr/bin/tclsh LANG=en_US.utf8 COLORTERM=gnome-terminal FSLREMOTECALL= WINDOWPATH=7 GNOME_KEYRING_CONTROL=/tmp/keyring-TA1iOj XAUTHORITY=/var/run/gdm3/auth-for-stefan-Zhyelq/database FSLOUTPUTTYPE=NIFTI_GZ SSH_AUTH_SOCK=/tmp/keyring-TA1iOj/ssh FSLMULTIFILEQUIT=TRUE XDG_DATA_DIRS=/usr/share/gnome:/usr/share/gdm/:/usr/local/share/:/usr/share/ FSLBROWSER=/etc/alternatives/x-www-browser SESSION_MANAGER=local/gehirne:@/tmp/.ICE-unix/2025,unix/gehirne:/tmp/.ICE-unix/2025 GDM_LANG=en_US.utf8 FSLDIR=/usr/share/fsl/4.1 ORBIT_SOCKETDIR=/tmp/orbit-stefan FSLPARALLEL=condor SGE_TASK_LAST=400 SHELL=/bin/bash GNOME_DESKTOP_SESSION_ID=this-is-deprecated PWD=/home/stefan/studies/tbss_-n/FA _=/usr/lib/fsl/4.1/tbss_2_reg USERNAME=stefan SGE_TASK_STEPSIZE= WINDOWID=16777219 FSLWISH=/usr/bin/wish USER=stefan GTK_RC_FILES=/etc/gtk/gtkrc:/home/stefan/.gtkrc-1.2-gnome2 DESKTOP_SESSION=default FSLMACHINELIST= FSLLOCKDIR= SHLVL=1 POSSUMDIR=/usr/share/fsl/4.1 POSIXLY_CORRECT=1 GDMSESSION=default SGE_TASK_ID=400 HOME=/home/stefan DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-Ovra5yhakV,guid=41b5e4185d4605edca2138e900000021 TERM=xterm OLDPWD=/home/stefan/studies/tbss_-n SSH_AGENT_PID=2062 GDM_KEYBOARD_LAYOUT=de'<span class="Apple-tab-span" style="white-space:pre">    </span>'nodeadkeys LOGNAME=stefan SGE_TASK_FIRST=1 DISPLAY=:0.0"</div><div>RequestDisk = DiskUsage</div><div>Requirements = ( TARGET.Arch == "X86_64" ) && ( TARGET.OpSys == "LINUX" ) && ( TARGET.Disk >= RequestDisk ) && ( TARGET.Memory >= RequestMemory ) && ( TARGET.HasFileTransfer )</div><div>MinHosts = 1</div><div>JobNotification = 0</div><div>NumCkpts = 0</div><div>LastSuspensionTime = 0</div><div>NumJobStarts = 0</div><div>WantRemoteSyscalls = false</div><div>JobLeaseDuration = 1200</div><div>ImageSize_RAW = 102</div><div>JobPrio = 0</div><div>RootDir = "/"</div><div>CurrentHosts = 0</div><div>StreamOut = false</div><div>WantRemoteIO = true</div><div>DiskUsage_RAW = 102</div><div>OnExitRemove = true</div><div>DiskUsage = 125</div><div>In = "/dev/null"</div><div>PeriodicRemove = false</div><div>RemoteUserCpu = 0.0</div><div>LocalUserCpu = 0.0</div><div>ExecutableSize = 125</div><div>RemoteSysCpu = 0.0</div><div>LocalSysCpu = 0.0</div><div>ClusterId = 45</div><div>CompletionDate = 0</div><div>RemoteWallClockTime = 0.0</div><div>Rank = 0.0</div><div>LeaveJobInQueue = false</div><div>MyType = "Job"</div><div>CondorVersion = "$CondorVersion: 7.8.0 May 09 2012 Debian-7.8.0~dfsg.1-1~nd60+1 $"</div><div>NumCkpts_RAW = 0</div><div>StreamErr = false</div><div>ProcId = 399</div><div>PeriodicHold = false</div><div>User = "stefan@gehirne.fritz.box"</div><div>LastJobStatus = 0</div><div>Out = "tbss_logs/tbss_2_reg.o45.400"</div><div>JobStatus = 1</div><div>ExecutableSize_RAW = 102</div><div>PeriodicRelease = false</div><div>AutoClusterAttrs = "JobUniverse,LastCheckpointPlatform,NumCkpts,RemoteGroup,SubmitterGroup,DiskUsage,ImageSize,RequestDisk,RequestMemory,Requirements,NiceUser,ConcurrencyLimits"</div><div>Args = "/home/stefan/studies/tbss_-n/FA/tbss_2_reg_qsub.HRdir6mUJNkG1"</div><div>RequestMemory = ifthenelse(MemoryUsage =!= undefined,MemoryUsage,( ImageSize + 1023 ) / 1024)</div><div>MaxHosts = 1</div><div>TotalSuspensions = 0</div><div>CommittedSlotTime = 0</div><div>NotifyUser = "stefan@localhost"</div><div>CondorPlatform = "$CondorPlatform: X86_64-Debian_6.0 $"</div><div>AutoClusterId = 1</div><div>ShouldTransferFiles = "YES"</div><div>ExitStatus = 0</div><div>QDate = 1337110949</div><div>EnteredCurrentStatus = 1337110950</div></div></span></div><div><br/></div><div><br/></div><div><br/></div><div><meta content="text/html; charset=utf-8" http-equiv="content-type"/><div style="font-family: 'Times New Roman'; font-size: medium; ">Interestingly: If I run tbss_2_reg -n a second time in the same terminal (on a fresh copy of the original data) I get following  error without anything happening.</div><div style="font-family: 'Times New Roman'; font-size: medium; "><div><br/></div><div>stefan@gehirne:~/studies/tbss_-n$ tbss_2_reg -n</div><div>wc: .commands: No such file or directory</div><div><br/></div><div>I wonder what the word count command is doing here?</div><div><br/></div><div><br/></div><div><br/></div><div>Cheers</div><div><br/></div><div>Stefan</div></div></div><div><br/></div></div></body></html>