[pymvpa] cann't find mvpa.mappers.mdp_adaptor
Rahul Gandhi
rahul.chem at gmail.com
Sat Apr 16 19:20:30 UTC 2011
Hi I have recently moved to Ubuntu platform. I tried to install PyMVPA
on ubuntu using synaptic package manager. I installed 1) Python-mvpa 2)
python-mvpa-lib and 3) python-mvpa-doc.
In Ipython, I am able to import mvpa but can't import
mvpa.mapper.mdp_adaptor (it doesn't have that module). I get following
error.
Please help me.
=============================================
In [6]: import mvpa.mappers.mdp_adpator
---------------------------------------------------------------------------
ImportError Traceback (most recent call
last)
/home/rahul/<ipython console> in <module>()
ImportError: No module named mdp_adpator
===============================================
Here is mvpa.wtf() output, incase you need it to debug. Thanks
In [9]: mvpa.wtf()
Out[9]:
Current date: 2011-04-16 13:01
PyMVPA:
Version: 0.4.5.dev
Path: /usr/lib/pymodules/python2.6/mvpa/__init__.py
Version control (GIT):
GIT information could not be obtained due
"/usr/lib/pymodules/python2.6/mvpa/.. is not under GIT"
SYSTEM:
OS: posix Linux 2.6.35-28-generic #49-Ubuntu SMP Tue Mar 1
14:39:03 UTC 2011
Distribution: Ubuntu/10.10/maverick
EXTERNALS:
Present: cPickle, ctypes, good scipy.stats.rdist, good
scipy.stats.rv_discrete.ppf, griddata, gzip, libsvm, libsvm verbosity
control, lxml, matplotlib, mdp, mdp ge 2.4, nifti, nifti ge
0.20090205.1, nose, numpy, openopt, pylab, pylab plottable, pywt, pywt
wp reconstruct, reportlab, running ipython env, scipy, sg ge 0.6.4,
sg_fixedcachesize, shogun, shogun.krr, shogun.mpd
Absent: atlas_fsl, atlas_pymvpa, elasticnet, glmnet, hcluster,
lars, pywt wp reconstruct fixed, rpy, shogun.lightsvm, shogun.svrlight,
weave
Versions of critical externals:
ctypes : 1.1.0
matplotlib : 0.99.3
lxml : 2.2.6
nifti : 0.20100412.1
numpy : 1.3.0
openopt : 0.27
openopt : failed to query due to "No module named openopt"
pywt : 0.2.0
scipy : 0.7.2
shogun : v0.9.3_r4889_2010-05-27_20:52_
Matplotlib backend: TkAgg
RUNTIME:
PyMVPA Environment Variables:
PyMVPA Runtime Configuration:
[externals]
have griddata = yes
have good scipy.stats.rdist = yes
have pylab plottable = yes
have pywt wp reconstruct = yes
have mdp = yes
have lxml = yes
have running ipython env = yes
have sg_fixedcachesize = yes
have elasticnet = no
have shogun.mpd = yes
have matplotlib = yes
have pywt wp reconstruct fixed = no
have scipy = yes
have reportlab = yes
have openopt = yes
have libsvm = yes
have shogun.krr = yes
have nifti ge 0.20090205.1 = yes
have nose = yes
have weave = no
have atlas_fsl = no
have ctypes = yes
have hcluster = no
have sg ge 0.6.4 = yes
have good scipy.stats.rv_discrete.ppf = yes
have libsvm verbosity control = yes
have mdp ge 2.4 = yes
have shogun.svrlight = no
have rpy = no
have shogun = yes
have glmnet = no
have lars = no
have nifti = yes
have atlas_pymvpa = no
have cpickle = yes
have numpy = yes
have pylab = yes
have shogun.lightsvm = no
have pywt = yes
have gzip = yes
[general]
verbose = 1
Process Information:
Name: ipython
State: R (running)
Tgid: 9578
Pid: 9578
PPid: 8931
TracerPid: 0
Uid: 1000 1000 1000 1000
Gid: 1000 1000 1000 1000
FDSize: 256
Groups: 4 20 24 46 111 119 122 1000
VmPeak: 414480 kB
VmSize: 414480 kB
VmLck: 0 kB
VmHWM: 71560 kB
VmRSS: 71560 kB
VmData: 61848 kB
VmStk: 264 kB
VmExe: 2152 kB
VmLib: 62624 kB
VmPTE: 788 kB
VmSwap: 0 kB
Threads: 2
SigQ: 1/16382
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000001001000
SigCgt: 0000000180000002
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
CapBnd: ffffffffffffffff
Cpus_allowed: 3
Cpus_allowed_list: 0-1
Mems_allowed: 00000000,00000001
Mems_allowed_list: 0
voluntary_ctxt_switches: 1613
nonvoluntary_ctxt_switches: 379
More information about the Pkg-ExpPsy-PyMVPA
mailing list