[pymvpa] cann't find mvpa.mappers.mdp_adaptor

Rahul Gandhi rahul.chem at gmail.com
Sat Apr 16 19:20:30 UTC 2011


Hi I have recently moved to Ubuntu platform. I tried to install PyMVPA
on ubuntu using synaptic package manager. I installed 1) Python-mvpa 2)
python-mvpa-lib and 3) python-mvpa-doc.

In Ipython, I am able to import mvpa but can't import
mvpa.mapper.mdp_adaptor (it doesn't have that module). I get following
error.

Please help me.

=============================================
In [6]: import mvpa.mappers.mdp_adpator
---------------------------------------------------------------------------
ImportError                               Traceback (most recent call
last)

/home/rahul/<ipython console> in <module>()

ImportError: No module named mdp_adpator

===============================================
Here is mvpa.wtf() output, incase you need it to debug. Thanks





In [9]: mvpa.wtf()
Out[9]: 
Current date:   2011-04-16 13:01
PyMVPA:
Version:       0.4.5.dev
Path:          /usr/lib/pymodules/python2.6/mvpa/__init__.py
Version control (GIT):
GIT information could not be obtained due
"/usr/lib/pymodules/python2.6/mvpa/.. is not under GIT"
SYSTEM:
OS:            posix Linux 2.6.35-28-generic #49-Ubuntu SMP Tue Mar 1
14:39:03 UTC 2011
Distribution:  Ubuntu/10.10/maverick
EXTERNALS:
Present:       cPickle, ctypes, good scipy.stats.rdist, good
scipy.stats.rv_discrete.ppf, griddata, gzip, libsvm, libsvm verbosity
control, lxml, matplotlib, mdp, mdp ge 2.4, nifti, nifti ge
0.20090205.1, nose, numpy, openopt, pylab, pylab plottable, pywt, pywt
wp reconstruct, reportlab, running ipython env, scipy, sg ge 0.6.4,
sg_fixedcachesize, shogun, shogun.krr, shogun.mpd
Absent:        atlas_fsl, atlas_pymvpa, elasticnet, glmnet, hcluster,
lars, pywt wp reconstruct fixed, rpy, shogun.lightsvm, shogun.svrlight,
weave
Versions of critical externals:
  ctypes      : 1.1.0
  matplotlib  : 0.99.3
  lxml        : 2.2.6
  nifti       : 0.20100412.1
  numpy       : 1.3.0
  openopt     : 0.27
  openopt     : failed to query due to "No module named openopt"
  pywt        : 0.2.0
  scipy       : 0.7.2
  shogun      : v0.9.3_r4889_2010-05-27_20:52_
Matplotlib backend: TkAgg
RUNTIME:
PyMVPA Environment Variables:
PyMVPA Runtime Configuration:
  [externals]
  have griddata = yes
  have good scipy.stats.rdist = yes
  have pylab plottable = yes
  have pywt wp reconstruct = yes
  have mdp = yes
  have lxml = yes
  have running ipython env = yes
  have sg_fixedcachesize = yes
  have elasticnet = no
  have shogun.mpd = yes
  have matplotlib = yes
  have pywt wp reconstruct fixed = no
  have scipy = yes
  have reportlab = yes
  have openopt = yes
  have libsvm = yes
  have shogun.krr = yes
  have nifti ge 0.20090205.1 = yes
  have nose = yes
  have weave = no
  have atlas_fsl = no
  have ctypes = yes
  have hcluster = no
  have sg ge 0.6.4 = yes
  have good scipy.stats.rv_discrete.ppf = yes
  have libsvm verbosity control = yes
  have mdp ge 2.4 = yes
  have shogun.svrlight = no
  have rpy = no
  have shogun = yes
  have glmnet = no
  have lars = no
  have nifti = yes
  have atlas_pymvpa = no
  have cpickle = yes
  have numpy = yes
  have pylab = yes
  have shogun.lightsvm = no
  have pywt = yes
  have gzip = yes
  
  [general]
  verbose = 1
Process Information:
  Name: ipython
  State: R (running)
  Tgid: 9578
  Pid: 9578
  PPid: 8931
  TracerPid: 0
  Uid: 1000 1000 1000 1000
  Gid: 1000 1000 1000 1000
  FDSize: 256
  Groups: 4 20 24 46 111 119 122 1000 
  VmPeak:   414480 kB
  VmSize:   414480 kB
  VmLck:        0 kB
  VmHWM:    71560 kB
  VmRSS:    71560 kB
  VmData:    61848 kB
  VmStk:      264 kB
  VmExe:     2152 kB
  VmLib:    62624 kB
  VmPTE:      788 kB
  VmSwap:        0 kB
  Threads: 2
  SigQ: 1/16382
  SigPnd: 0000000000000000
  ShdPnd: 0000000000000000
  SigBlk: 0000000000000000
  SigIgn: 0000000001001000
  SigCgt: 0000000180000002
  CapInh: 0000000000000000
  CapPrm: 0000000000000000
  CapEff: 0000000000000000
  CapBnd: ffffffffffffffff
  Cpus_allowed: 3
  Cpus_allowed_list: 0-1
  Mems_allowed: 00000000,00000001
  Mems_allowed_list: 0
  voluntary_ctxt_switches: 1613
  nonvoluntary_ctxt_switches: 379





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