[pymvpa] spatial normalization for MVPA - is it good or bad?

[Matthew Brett]

Hi,

On Tue, May 6, 2014 at 8:24 AM, Vadim Axel <axel.vadim at gmail.com> wrote:
> Are there packages that do joint transformation at once?
> As far as I understand the SPM  uses separate steps.

No, not if it can avoid it.  If you motion correction using 'realign'
without reslicing, then SPM only changes the image affines, and
doesn't reslice the images.

If you then do spatial normalization and select the realigned (not
resliced) data - the whole transformation is applied in one go (motion
correction + spatial normalization),

Cheers,

Matthew