[pymvpa] Pkg-ExpPsy-PyMVPA Digest, Vol 87, Issue 8

[Charlotte Murphy]

Thank you for the quick reply, I clearly overlooked that!

Cheers,
Charlotte

On 27 May 2015 at 13:00, <pkg-exppsy-pymvpa-request at lists.alioth.debian.org>
wrote:

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> Today's Topics:
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>    1. Re: RSA - PDistTargetSimilarity (Hang Yee Chan)
>    2. Re: RSA - PDistTargetSimilarity (Yaroslav Halchenko)
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> ----------------------------------------------------------------------
>
> Message: 1
> Date: Tue, 26 May 2015 14:11:21 +0200
> From: Hang Yee Chan <chan at rsm.nl>
> To: <pkg-exppsy-pymvpa at lists.alioth.debian.org>
> Subject: Re: [pymvpa] RSA - PDistTargetSimilarity
> Message-ID:
>         <CAJkZt+0ou_xEw5jnuDC1haaOQyRb-tSqKcWhi28j9het=
> 7O8dQ at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Hi Charlotte
>
> You can use the scipy.spatial.distance.squareform function to convert
> to/from square form (6x6) and condensed form (1x15).
>
> Cheers
> Hang-yee
> PhD candidate
> Erasmus University
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> ------------------------------
>
> Message: 2
> Date: Tue, 26 May 2015 08:37:07 -0400
> From: Yaroslav Halchenko <debian at onerussian.com>
> To: Development and support of PyMVPA
>         <pkg-exppsy-pymvpa at lists.alioth.debian.org>
> Subject: Re: [pymvpa] RSA - PDistTargetSimilarity
> Message-ID: <20150526123707.GN17638 at onerussian.com>
> Content-Type: text/plain; charset=utf-8
>
>
> On Tue, 26 May 2015, Charlotte Murphy wrote:
> >    I realise this is because I have a vector vs. 6x6 matrix. I assume I
> need
> >    to create a vector that reflects the off diagonal dissimilarity
> structure
> >    for my input_model? If so, is there a simple way to do this?
>
> from scipy.spatial.distance import squareform
>
> ?
>
> btw -- just in case -- have a look at
> http://www.pymvpa.org/examples/rsa_fmri.html
>
> which shows typical usecases
>
> Cheers,
> --
> Yaroslav O. Halchenko, Ph.D.
> http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org
> Research Scientist,            Psychological and Brain Sciences Dept.
> Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
> Phone: +1 (603) 646-9834                       Fax: +1 (603) 646-1419
> WWW:   http://www.linkedin.com/in/yarik
>
>
>
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> End of Pkg-ExpPsy-PyMVPA Digest, Vol 87, Issue 8
> ************************************************
>



-- 
Charlotte Murphy
PhD Student
Department of Psychology
University of York,
Heslington, York, YO10 5DD, UK
Email: cem552 at york.ac.uk
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