From john at johnjohnson.info Sun Oct 24 17:56:37 2021 From: john at johnjohnson.info (John Johnson) Date: Sun, 24 Oct 2021 12:56:37 -0400 Subject: [pymvpa] Segmentation fault - macOS 11.6, Python 2.7.16, pymvpa from latest gh clone Message-ID: <385EB894-A394-4DCA-82DA-1D5DA0217556@johnjohnson.info> After cloning the repo from GitHub, then building and installing as instructed, importing mvpa2.suite or mvpa2.tutorial_suite causes a segmentation fault. mvpa2.suite: ``` (env_py2) Johns-iMac-Pro :: /Volumes/Data/Tutorials ? python Python 2.7.16 |Anaconda, Inc.| (default, Sep 24 2019, 16:55:38) [GCC 4.2.1 Compatible Clang 4.0.1 (tags/RELEASE_401/final)] on darwin Type "help", "copyright", "credits" or "license" for more information. >>> import mvpa2.suite /Users/john/opt/anaconda3/envs/env_py2/lib/python2.7/site-packages/mvpa2/base/hdf5.py:40: H5pyDeprecationWarning: The h5py.highlevel module is deprecated, code should import directly from h5py, e.g. 'from h5py import File'. import h5py.highlevel # >= 2.8.0, https://github.com/h5py/h5py/issues/1063 [1] 92194 segmentation fault python (env_py2) Johns-iMac-Pro :: /Volumes/Data/Tutorials 139 ? python -V Python 2.7.16 :: Anaconda, Inc. (env_py2) Johns-iMac-Pro :: /Volumes/Data/Tutorials ? # macOS 11.6 (20G165) (env_py2) Johns-iMac-Pro :: /Volumes/Data/Tutorials ? ``` mvpa2.tutorial_suite: ``` (env_py2) Johns-iMac-Pro :: /Volumes/Data/Tutorials ? python -m mvpa2.tutorial_suite /Users/john/opt/anaconda3/envs/env_py2/lib/python2.7/site-packages/mvpa2/base/hdf5.py:40: H5pyDeprecationWarning: The h5py.highlevel module is deprecated, code should import directly from h5py, e.g. 'from h5py import File'. import h5py.highlevel # >= 2.8.0, https://github.com/h5py/h5py/issues/1063 [1] 93034 segmentation fault python -m mvpa2.tutorial_suite ``` Thanks for any advice! -- John