<div dir="ltr"><div><div><div><div>Thank you very much! I think it works.<br><br>I ran in terminal:<br><br>sudo dpkg --purge python-scikits-learn<br>sudo dpkg --purge python-sklearn<br>export MVPA_EXTERNALS_HAVE_SKL=no<br>sudo apt-get install python-mvpa2<br>sudo apt-get autoremove python-sklearn-lib<br><br>python<br>Python 2.7.3 (default, Jun 21 2016, 18:38:19) <br>[GCC 4.7.2] on linux2<br>Type "help", "copyright", "credits" or "license" for more information.<br>>>> from mvpa2.tutorial_suite import *<br>/usr/lib/python2.7/dist-packages/nose/util.py:14: DeprecationWarning: The compiler package is deprecated and removed in Python 3.x.<br> from compiler.consts import CO_GENERATOR<br><br><br></div>Should I just disregard this DeprecationWarning?<br><br></div>I am afraid to upgrade Debian from wheezy - who knows what's gonna happen<br><br></div>Thanks again,<br></div>Anna.<br><div><div><div><div><br><br></div></div></div></div></div><div class="gmail_extra"><br><div class="gmail_quote">On Wed, Sep 13, 2017 at 10:17 AM, Yaroslav Halchenko <span dir="ltr"><<a href="mailto:debian@onerussian.com" target="_blank">debian@onerussian.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">big summary -- system and installation(s) on it quite old<br>
<br>
1. easiest resolution(s):<br>
<br>
remove or disable sklearn<br>
<br>
remove: depends on how was installed, could be dpkg --purge<br>
python-sklearn<br>
<br>
disable: export MVPA_EXTERNALS_HAVE_SKL=no<br>
<br>
if you don't use it for your current analysis<br>
<br>
2. updates:<br>
<br>
<br>
> PyMVPA:<br>
> Version: 2.1.0<br>
<br>
even on wheezy which you seems to use we have a backport of 2.6.0<br>
release avail from neurodebian:<br>
<br>
<a href="http://neuro.debian.net/pkgs/python-mvpa2.html" rel="noreferrer" target="_blank">http://neuro.debian.net/pkgs/<wbr>python-mvpa2.html</a><br>
<span class=""><br>
> OS: posix Linux 3.2.0-4-amd64 #1 SMP Debian 3.2.89-2<br>
> Distribution: debian/7.11<br>
<br>
</span>> skl : 0.16.1<br>
<br>
unfortunately for wheezy we do not have newer backport. altogether you<br>
might benefit from upgrading from oldoldstable of Debian which you are<br>
using ATM<br>
<span class=""><br>
> PYTHONPATH :<br>
> ":/usr/lib/python2.7/lib-old:/<wbr>usr/local/lib/python2.7/dist-<wbr>packages:/data:/usr/lib/<wbr>python2.7/lib-dynload:/usr/<wbr>lib/python2.7/plat-linux2:/<wbr>usr/lib/python2.7/dist-<wbr>packages/gtk-2.0:/usr/lib/<wbr>python2.7/dist-packages:/usr/<wbr>lib/pymodules/python2.7:/usr/<wbr>lib/python2.7/dist-packages/<wbr>IPython/extensions:/usr/lib/<wbr>python2.7:/usr/lib/python2.7/<wbr>dist-packages/wx-2.8-gtk2-<wbr>unicode:/usr/lib/python2.7/<wbr>lib-tk:/usr/lib/python2.7/<wbr>dist-packages/PIL"<br>
<br>
</span>there is some danger in the paths! e.g. you could shot<br>
yourself in the foot (e.g. having some module under /data<br>
<div class="HOEnZb"><div class="h5"><br>
--<br>
Yaroslav O. Halchenko<br>
Center for Open Neuroscience <a href="http://centerforopenneuroscience.org" rel="noreferrer" target="_blank">http://<wbr>centerforopenneuroscience.org</a><br>
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755<br>
Phone: <a href="tel:%2B1%20%28603%29%20646-9834" value="+16036469834">+1 (603) 646-9834</a> Fax: <a href="tel:%2B1%20%28603%29%20646-1419" value="+16036461419">+1 (603) 646-1419</a><br>
WWW: <a href="http://www.linkedin.com/in/yarik" rel="noreferrer" target="_blank">http://www.linkedin.com/in/<wbr>yarik</a><br>
<br>
______________________________<wbr>_________________<br>
Pkg-ExpPsy-PyMVPA mailing list<br>
<a href="mailto:Pkg-ExpPsy-PyMVPA@lists.alioth.debian.org">Pkg-ExpPsy-PyMVPA@lists.<wbr>alioth.debian.org</a><br>
<a href="http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-exppsy-pymvpa" rel="noreferrer" target="_blank">http://lists.alioth.debian.<wbr>org/cgi-bin/mailman/listinfo/<wbr>pkg-exppsy-pymvpa</a><br>
</div></div></blockquote></div><br></div>